Resource
| Id | Histone_ChIP-seq/ENCSR558SJC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR558SJC [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (67 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN623NJI|/analyses/ENCAN623NJI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF191RTV|/files/ENCFF191RTV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 30068489 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR558SJC | float |
Histone_ChIP-seq_ENCSR558SJC |
Histone_ChIP-seq ENCSR558SJC [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K36me3"]
|
 |
[1.81, 19.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37372063 | 1.16% | 88553 |
| chr1 | 3927224 | 1.58% | 9009 |
| chr2 | 2779301 | 1.15% | 6782 |
| chr3 | 2326260 | 1.17% | 5651 |
| chr4 | 1399683 | 0.74% | 3670 |
| chr5 | 1773798 | 0.98% | 4398 |
| chr6 | 1661914 | 0.97% | 4120 |
| chr7 | 1592374 | 1.00% | 3924 |
| chr8 | 1177734 | 0.81% | 2994 |
| chr9 | 1756353 | 1.27% | 4121 |
| chr10 | 1614858 | 1.21% | 4047 |
| chr11 | 2011610 | 1.49% | 4664 |
| chr12 | 2127093 | 1.60% | 4830 |
| chr13 | 736565 | 0.64% | 1940 |
| chr14 | 1370260 | 1.28% | 3201 |
| chr15 | 1406565 | 1.38% | 3390 |
| chr16 | 1764375 | 1.95% | 3926 |
| chr17 | 2256604 | 2.71% | 4971 |
| chr18 | 581143 | 0.72% | 1533 |
| chr19 | 1986804 | 3.39% | 4197 |
| chr20 | 1290162 | 2.00% | 2908 |
| chr21 | 420154 | 0.90% | 1027 |
| chr22 | 1106786 | 2.18% | 2413 |
| chrX | 291435 | 0.19% | 797 |
| chrY | 13008 | 0.02% | 40 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 88553 | 150 | 7292 | 422.03 | 332 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF310IRC.bed.gz | 1.63 MB | 8b0bd265a54d91b1d6b8a33a227700e6 |
| ENCFF310IRC.tabix.bed.gz | 852.04 KB | 70c55525362082c129c8ca52ae1d416a |
| ENCFF310IRC.tabix.bed.gz.tbi | 170.27 KB | 0e90a5c0146fe73322a6b1d88abd937a |
| genomic_resource.yaml | 1.99 KB | 0e9bcac912ce6821fe77e0c20062f828 |
| statistics/ |