Resource

Id Histone_ChIP-seq/ENCSR557OWYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR557OWY [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR557OWY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (54 years)
  • date_created: 2017-12-06T20:59:01.403127+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR557OWY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR557OWY float

Histone_ChIP-seq_ENCSR557OWY
Histone_ChIP-seq ENCSR557OWY [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR557OWY [1.45, 24.6]
n
30,333,359
mean
8.99
sd
3.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 303333590.94% 20805
chr1 3033492 1.22% 2107
chr2 2132259 0.88% 1415
chr3 1741711 0.88% 1169
chr4 1316326 0.69% 833
chr5 1442497 0.79% 925
chr6 1783630 1.04% 1150
chr7 1555541 0.98% 1072
chr8 1097320 0.76% 761
chr9 1242971 0.90% 860
chr10 1291410 0.97% 863
chr11 1609938 1.19% 1087
chr12 1598300 1.20% 1050
chr13 632034 0.55% 419
chr14 1003489 0.94% 689
chr15 993012 0.97% 662
chr16 1159488 1.28% 820
chr17 1726749 2.07% 1226
chr18 509491 0.63% 334
chr19 1833898 3.13% 1437
chr20 736231 1.14% 519
chr21 310052 0.66% 213
chr22 639393 1.26% 475
chrX 903594 0.58% 690
chrY 40533 0.07% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20805 250 12822 1457.98 1317
global segment-length histogram

Files

Filename Size md5
ENCFF624ARZ.bed.gz 589.79 KB d1e0ed70a9ec708a55abbbd74e5d44ea
ENCFF624ARZ.tabix.bed.gz 245.28 KB 60d86480008d1bacfddecdd6d782d982
ENCFF624ARZ.tabix.bed.gz.tbi 140.98 KB 541d5c554242e61cdd63a702e5bf1854
genomic_resource.yaml 1.51 KB 59b4d7bb0492cde478ced4a18a4f0845
statistics/