Histone_ChIP-seq_ENCSR556QXD
Histone_ChIP-seq ENCSR556QXD [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR556QXD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR556QXD [biosamplesummary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN656UAE|/analyses/ENCAN656UAE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN656UAE|/analyses/ENCAN656UAE/} has in progress subobject document {40d6a9ed-f10d-474d-8fb6-79d57eb095a9|/documents/40d6a9ed-f10d-474d-8fb6-79d57eb095a9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF464ZDR|/files/ENCFF464ZDR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF464ZDR|/files/ENCFF464ZDR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR556QXD | float |
Histone_ChIP-seq_ENCSR556QXD |
Histone_ChIP-seq ENCSR556QXD [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K4me3"]
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[1.7, 108] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF401XEH.bed.gz | 645.34 KB | a87c9414398f063ae568c97c299331b9 |
| ENCFF401XEH.bed.gz.dvc | 100.0 B | b07cd70ffc41f81dd915102f070ba3ad |
| ENCFF401XEH.tabix.bed.gz | 277.41 KB | 606f0e521b8392436125fb20867a2ca7 |
| ENCFF401XEH.tabix.bed.gz.dvc | 106.0 B | c266bdd4468328a298da61ac16d22e31 |
| ENCFF401XEH.tabix.bed.gz.tbi | 151.39 KB | 6688cb0e69404918777acacdccab9a09 |
| ENCFF401XEH.tabix.bed.gz.tbi.dvc | 110.0 B | 1d74d4da35002658a0861a86f508bee1 |
| genomic_resource.yaml | 2.97 KB | adaeeb976409ae98fc30ada59fed5fbf |
| genomic_resource_original.yaml | 2.83 KB | fb935035ea951372a10458d1612d88d3 |
| statistics/ |