Resource

Id Histone_ChIP-seq/ENCSR555TAXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR555TAX [biosample_summary="Homo sapiens PC-9" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR555TAX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2014-10-24T16:16:49.169793+00:00
  • date_released: 2016-05-06
  • doi: 10.17989/ENCSR555TAX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR555TAX float

Histone_ChIP-seq_ENCSR555TAX
Histone_ChIP-seq ENCSR555TAX [biosample_summary="Homo sapiens PC-9" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR555TAX [1.5, 7.69]
n
30,399,782
mean
3.17
sd
0.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 303997820.94% 53636
chr1 2482140 1.00% 4671
chr1_KI270709v1_random 2295 3.43% 3
chr1_KI270712v1_random 278 0.16% 1
chr2 2802735 1.16% 5001
chr2_KI270716v1_random 6904 4.49% 6
chr3 2330496 1.18% 4337
chr4 748091 0.39% 1502
chr4_GL000008v2_random 3952 1.88% 3
chr5 2095412 1.15% 4023
chr5_GL000208v1_random 642 0.69% 1
chr6 1785433 1.05% 3491
chr7 2684726 1.68% 4643
chr8 1187477 0.82% 2150
chr9 925983 0.67% 1759
chr10 808573 0.60% 1456
chr11 1364457 1.01% 2549
chr12 1652278 1.24% 3162
chr13 865312 0.76% 1781
chr14 698902 0.65% 1256
chr14_GL000225v1_random 3951 1.87% 4
chr14_KI270722v1_random 259 0.13% 1
chr15 368984 0.36% 714
chr16 799599 0.89% 1155
chr16_KI270728v1_random 1059 0.06% 3
chr17 685887 0.82% 1107
chr17_KI270729v1_random 93692 33.36% 80
chr17_KI270730v1_random 8477 7.53% 13
chr18 570838 0.71% 1128
chr19 3651913 6.23% 4552
chr20 643720 1.00% 1144
chr21 221386 0.47% 297
chr22 270382 0.53% 430
chr22_KI270733v1_random 1009 0.56% 3
chr22_KI270735v1_random 2454 5.73% 4
chr22_KI270736v1_random 1686 0.93% 3
chr22_KI270738v1_random 14490 14.58% 23
chrUn_GL000216v2 8513 4.82% 10
chrUn_GL000219v1 2871 1.60% 7
chrUn_GL000224v1 10228 5.69% 9
chrUn_KI270322v1 374 1.74% 1
chrUn_KI270424v1 296 13.83% 1
chrUn_KI270429v1 460 33.80% 1
chrUn_KI270435v1 3773 4.06% 9
chrUn_KI270438v1 41207 36.63% 40
chrUn_KI270442v1 63523 16.20% 68
chrUn_KI270465v1 373 21.03% 1
chrUn_KI270467v1 1199 30.59% 2
chrUn_KI270468v1 781 19.26% 2
chrUn_KI270507v1 241 4.50% 1
chrUn_KI270508v1 420 21.53% 1
chrUn_KI270512v1 932 4.11% 2
chrUn_KI270519v1 3620 2.62% 7
chrUn_KI270522v1 571 10.06% 1
chrUn_KI270538v1 2009 2.20% 6
chrUn_KI270588v1 435 7.06% 1
chrUn_KI270589v1 2354 5.29% 2
chrUn_KI270591v1 615 10.61% 2
chrUn_KI270742v1 282 0.15% 1
chrUn_KI270747v1 865 0.44% 1
chrUn_KI270750v1 278 0.19% 1
chrUn_KI270751v1 556 0.37% 1
chrUn_KI270756v1 2034 2.56% 3
chrUn_KI270757v1 2272 3.19% 4
chrX 455709 0.29% 983
chrY 7119 0.01% 12
3301 contigs with no values (122877524 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53636 180 14517 566.78 439
global segment-length histogram

Files

Filename Size md5
ENCFF813YSM.bed.gz 1.18 MB 0b2921d6fb9177b0b39d8b0848b0e771
ENCFF813YSM.tabix.bed.gz 558.83 KB 529996105adbd7f5b58d3c451b58259b
ENCFF813YSM.tabix.bed.gz.tbi 230.97 KB b9a2a452c8c9d91f6b0be04edd0939c7
genomic_resource.yaml 2.36 KB 6cfe7fc5788990d0df72b1d34671a628
statistics/