Resource

Id Histone_ChIP-seq/ENCSR554XXQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR554XXQ [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR554XXQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female child (16 years)
  • date_created: 2022-05-11T01:53:56.237015+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR554XXQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR554XXQ float

Histone_ChIP-seq_ENCSR554XXQ
Histone_ChIP-seq ENCSR554XXQ [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR554XXQ [1.65, 11.4]
n
106,317,606
mean
4.54
sd
1.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1063176063.30% 99957
chr1 10708261 4.30% 9829
chr2 8463142 3.49% 7925
chr3 7294092 3.68% 6794
chr4 4753153 2.50% 4661
chr5 5618691 3.10% 5173
chr6 6101839 3.57% 5931
chr7 5107976 3.21% 5013
chr8 4708224 3.24% 4471
chr9 5113859 3.70% 4595
chr10 5372440 4.02% 5019
chr11 5619525 4.16% 5133
chr12 5548182 4.16% 5248
chr13 2449388 2.14% 2418
chr14 3517663 3.29% 3288
chr15 3695991 3.62% 3376
chr16 3969244 4.39% 3732
chr17 5020328 6.03% 4592
chr18 2222119 2.76% 2147
chr19 3267231 5.57% 3163
chr20 2952777 4.58% 2663
chr21 1113828 2.38% 1070
chr22 2615235 5.15% 2253
chrX 1084418 0.69% 1463
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99957 210 15408 1063.63 825
global segment-length histogram

Files

Filename Size md5
ENCFF044OKT.bed.gz 2.22 MB ace69e2a34d2942c1db1dbb456ff0552
ENCFF044OKT.tabix.bed.gz 1.03 MB 22c75d54d021a18d962dbb46717e3720
ENCFF044OKT.tabix.bed.gz.tbi 289.95 KB c8f4e3f40fd8b29fe8d29b6f76c2d008
genomic_resource.yaml 1.53 KB f601f9bcbb542f6d6926dd169b37e012
statistics/