Histone_ChIP-seq_ENCSR554TZE
Histone_ChIP-seq ENCSR554TZE [biosample_summary="Homo sapiens H9" and target="H4K5ac"]
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| Id: | Histone_ChIP-seq/ENCSR554TZE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR554TZE [biosamplesummary="Homo sapiens H9" and target="H4K5ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN678JYO|/analyses/ENCAN678JYO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF867GZF|/files/ENCFF867GZF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14255173 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K5ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF867GZF|/files/ENCFF867GZF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF867GZF|/files/ENCFF867GZF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR554TZE | float |
Histone_ChIP-seq_ENCSR554TZE |
Histone_ChIP-seq ENCSR554TZE [biosample_summary="Homo sapiens H9" and target="H4K5ac"]
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[1.66, 23] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF993ETS.bed.gz | 572.75 KB | 1ade62499dbdd80926086b3261a2296b |
| ENCFF993ETS.bed.gz.dvc | 100.0 B | 2bcf12b8c12eb689a3f0df821da0efa3 |
| ENCFF993ETS.tabix.bed.gz | 294.29 KB | 30c0c87802776ffecbbe001cdb57234b |
| ENCFF993ETS.tabix.bed.gz.dvc | 106.0 B | d41edd1edfb219a052334560c79251a7 |
| ENCFF993ETS.tabix.bed.gz.tbi | 212.87 KB | 91e9d0ff7c81a2c0945d7020aa71a5b0 |
| ENCFF993ETS.tabix.bed.gz.tbi.dvc | 110.0 B | 7762d505c6437a75c34a772fe7129180 |
| genomic_resource.yaml | 3.15 KB | b0cbc2eb1297c6c9b2ee2a1a0e384b3a |
| genomic_resource_original.yaml | 3.05 KB | 2965603dccee36a4a0ecafb750da895e |
| statistics/ |