Resource

Id Histone_ChIP-seq/ENCSR552TQBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR552TQB [biosample_summary="Homo sapiens caudate nucleus tissue female adult (75 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR552TQB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001873/
  • biosample_summary: Homo sapiens caudate nucleus tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:06.208132+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR552TQB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR552TQB float

Histone_ChIP-seq_ENCSR552TQB
Histone_ChIP-seq ENCSR552TQB [biosample_summary="Homo sapiens caudate nucleus tissue female adult (75 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR552TQB [1.71, 14.4]
n
19,353,234
mean
4.73
sd
1.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 193532340.60% 43552
chr1 1239287 0.50% 2842
chr2 1448255 0.60% 3371
chr3 1069498 0.54% 2511
chr4 1164797 0.61% 2704
chr5 1358150 0.75% 2964
chr6 931046 0.55% 2257
chr7 1038031 0.65% 2325
chr8 980368 0.68% 2231
chr9 675594 0.49% 1525
chr10 883666 0.66% 1983
chr11 895527 0.66% 2085
chr12 974208 0.73% 2103
chr13 478417 0.42% 1171
chr14 534786 0.50% 1235
chr15 473911 0.46% 1044
chr16 546952 0.61% 1176
chr17 400447 0.48% 883
chr18 418546 0.52% 981
chr19 1544936 2.64% 2390
chr20 364878 0.57% 869
chr21 248694 0.53% 561
chr22 177278 0.35% 410
chrX 1504351 0.96% 3926
chrY 1611 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43552 160 11200 444.37 363
global segment-length histogram

Files

Filename Size md5
ENCFF477FPU.bed.gz 764.28 KB 491e4ea1514f03c1ed2dfa22e96ee62e
ENCFF477FPU.tabix.bed.gz 405.28 KB 4363cb40401b9826a7404cc509915545
ENCFF477FPU.tabix.bed.gz.tbi 222.89 KB 9fb8c0c750c5b2fa36fb44eb0d818462
genomic_resource.yaml 1.52 KB 7308cef52e0195a535a1d77120282dc7
statistics/