Histone_ChIP-seq_ENCSR552MZH
Histone_ChIP-seq ENCSR552MZH [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR552MZH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR552MZH [biosamplesummary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN512PXQ|/analyses/ENCAN512PXQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF943HRF|/files/ENCFF943HRF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17974996 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF943HRF|/files/ENCFF943HRF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR552MZH | float |
Histone_ChIP-seq_ENCSR552MZH |
Histone_ChIP-seq ENCSR552MZH [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K36me3"]
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[1.86, 33.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF781CXC.bed.gz | 1.94 MB | 65c317cf31a4e5e7942a45af3052decd |
| ENCFF781CXC.bed.gz.dvc | 101.0 B | 55d33b288d4605c7ed9e9e73c111c9a0 |
| ENCFF781CXC.tabix.bed.gz | 937.45 KB | 82015fbaeee50a3d8af9eb672246d18d |
| ENCFF781CXC.tabix.bed.gz.dvc | 106.0 B | d0eea371efbe49a7017dbd6ce5bc8ead |
| ENCFF781CXC.tabix.bed.gz.tbi | 191.15 KB | 02a8ec44f3ce17c9002acae520b6a384 |
| ENCFF781CXC.tabix.bed.gz.tbi.dvc | 110.0 B | 8709fd100dd9754a815a10535f32a868 |
| genomic_resource.yaml | 2.61 KB | 7ec784aef0c698f247babe59eef5e91b |
| genomic_resource_original.yaml | 2.48 KB | 96d603943107a8d353e0c3da6df7804a |
| statistics/ |