Resource

Id Histone_ChIP-seq/ENCSR552ICYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR552ICY [biosample_summary="Homo sapiens stomach tissue male adult (37 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR552ICY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (37 years)
  • date_created: 2019-04-27T22:51:05.833190+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR552ICY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR552ICY float

Histone_ChIP-seq_ENCSR552ICY
Histone_ChIP-seq ENCSR552ICY [biosample_summary="Homo sapiens stomach tissue male adult (37 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR552ICY [1.33, 20.1]
n
219,592,490
mean
6.77
sd
2.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2195924906.83% 80680
chr1 21301449 8.56% 7498
chr1_KI270711v1_random 1952 4.62% 2
chr2 17076301 7.05% 6868
chr3 14076079 7.10% 5586
chr4 9221977 4.85% 3966
chr5 10935389 6.02% 4178
chr6 10240259 6.00% 4210
chr7 10166330 6.38% 4009
chr8 7942361 5.47% 3243
chr9 9701341 7.01% 3678
chr10 9901914 7.40% 3787
chr11 11045504 8.18% 3776
chr12 11720516 8.79% 4043
chr13 4832045 4.23% 2152
chr14 7791185 7.28% 2811
chr14_GL000194v1_random 760 0.40% 1
chr15 8411401 8.25% 3110
chr16 9445946 10.46% 2850
chr17 12031653 14.45% 3798
chr17_GL000205v2_random 797 0.43% 1
chr18 3845774 4.78% 1719
chr19 12015571 20.50% 3300
chr20 6542883 10.15% 2073
chr21 2575888 5.51% 788
chr22 5215993 10.26% 1528
chrUn_GL000195v1 389 0.21% 1
chrUn_GL000219v1 9724 5.43% 9
chrX 3349244 2.15% 1587
chrY 191865 0.34% 108
3337 contigs with no values (128295721 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80680 285 79752 2721.77 1375
global segment-length histogram

Files

Filename Size md5
ENCFF566VNI.bed.gz 1.9 MB a95e1cccd81372e57d1273dc91a785e2
ENCFF566VNI.tabix.bed.gz 876.33 KB c6cdda296c110d872f034b1c7a2f8c41
ENCFF566VNI.tabix.bed.gz.tbi 143.59 KB fa93504ba06768b8a855cb092d66558e
genomic_resource.yaml 1.49 KB 2d9635ceca328f43d159d2dc7953ae11
statistics/