Resource

Id Histone_ChIP-seq/ENCSR551QXEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR551QXE [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR551QXE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:08.957493+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR551QXE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR551QXE float

Histone_ChIP-seq_ENCSR551QXE
Histone_ChIP-seq ENCSR551QXE [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR551QXE [1.46, 39.4]
n
33,087,218
mean
10.7
sd
5.66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 330872181.03% 41736
chr1 3233448 1.30% 4026
chr2 2334071 0.96% 2964
chr3 2031569 1.02% 2495
chr4 1425857 0.75% 1734
chr5 1703798 0.94% 2073
chr6 2032929 1.19% 2549
chr7 1540535 0.97% 1950
chr8 1273319 0.88% 1591
chr9 1375071 0.99% 1760
chr10 1457243 1.09% 1872
chr11 1788094 1.32% 2231
chr12 1735163 1.30% 2210
chr13 789912 0.69% 991
chr14 1090685 1.02% 1362
chr15 1045294 1.02% 1299
chr16 1218525 1.35% 1524
chr17 1728180 2.08% 2150
chr17_KI270729v1_random 507 0.18% 2
chr18 634267 0.79% 835
chr19 2043030 3.49% 2650
chr20 800353 1.24% 1008
chr21 318171 0.68% 433
chr22 647339 1.27% 848
chr22_KI270735v1_random 386 0.90% 1
chr22_KI270736v1_random 1109 0.61% 3
chrUn_GL000216v2 404 0.23% 1
chrUn_GL000219v1 593 0.33% 1
chrUn_GL000224v1 371 0.21% 1
chrUn_KI270591v1 502 8.66% 1
chrX 836493 0.54% 1171
3336 contigs with no values (185257635 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41736 165 8439 792.77 603
global segment-length histogram

Files

Filename Size md5
ENCFF648OLF.bed.gz 961.51 KB beb813d0f9482aa64a3f9a400fd95e97
ENCFF648OLF.tabix.bed.gz 443.94 KB 37b1874d00d71b1ae960ba7a2b22b2c3
ENCFF648OLF.tabix.bed.gz.tbi 199.41 KB 191901d78fc21a093315c17cd52bccc3
genomic_resource.yaml 1.52 KB f109dbbf0ea276dd3f4e0edc1d97f559
statistics/