Resource

Id Histone_ChIP-seq/ENCSR550GSEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR550GSE [biosample_summary="Homo sapiens UCSF-4" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR550GSE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007116/
  • biosample_summary: Homo sapiens UCSF-4
  • date_created: 2015-09-15T20:27:09.885190+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR550GSE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR550GSE float

Histone_ChIP-seq_ENCSR550GSE
Histone_ChIP-seq ENCSR550GSE [biosample_summary="Homo sapiens UCSF-4" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR550GSE [1.47, 44]
n
98,725,266
mean
6.25
sd
2.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 987252663.07% 170023
chr1 3768228 1.51% 6599
chr1_KI270706v1_random 20015 11.43% 65
chr1_KI270707v1_random 3302 10.31% 13
chr1_KI270708v1_random 4176 3.27% 14
chr1_KI270709v1_random 24525 36.68% 48
chr1_KI270710v1_random 321 0.80% 2
chr1_KI270712v1_random 2353 1.34% 7
chr1_KI270714v1_random 130 0.31% 1
chr2 3031054 1.25% 6291
chr2_KI270716v1_random 8501 5.53% 6
chr3 2358992 1.19% 4945
chr3_GL000221v1_random 1762 1.13% 7
chr4 2760585 1.45% 5758
chr4_GL000008v2_random 9785 4.67% 25
chr5 2640668 1.45% 5380
chr5_GL000208v1_random 24678 26.62% 32
chr6 2128689 1.25% 4405
chr7 4826114 3.03% 7167
chr8 3172297 2.19% 5044
chr9 1817882 1.31% 3637
chr9_KI270718v1_random 279 0.73% 1
chr9_KI270719v1_random 19281 10.90% 46
chr9_KI270720v1_random 12688 32.49% 27
chr10 3546962 2.65% 5698
chr11 3374159 2.50% 5813
chr12 3166469 2.38% 4767
chr13 1702032 1.49% 3214
chr14 2398095 2.24% 3677
chr14_GL000009v2_random 25967 12.87% 89
chr14_GL000194v1_random 28193 14.72% 73
chr14_GL000225v1_random 143240 67.83% 97
chr14_KI270722v1_random 51542 26.56% 86
chr14_KI270723v1_random 17808 46.72% 31
chr14_KI270724v1_random 15142 38.28% 28
chr14_KI270725v1_random 16004 9.26% 35
chr14_KI270726v1_random 2455 5.61% 8
chr15 1695306 1.66% 3172
chr15_KI270727v1_random 1040 0.23% 4
chr16 2230368 2.47% 3254
chr16_KI270728v1_random 44950 2.40% 103
chr17 1623628 1.95% 2504
chr17_GL000205v2_random 62922 33.90% 27
chr17_KI270729v1_random 119853 42.68% 104
chr17_KI270730v1_random 26527 23.57% 10
chr18 871242 1.08% 1966
chr19 6252117 10.67% 8195
chr20 1484029 2.30% 2663
chr21 1247053 2.67% 2247
chr22 1809761 3.56% 3051
chr22_KI270732v1_random 13495 32.48% 24
chr22_KI270733v1_random 10794 6.00% 25
chr22_KI270735v1_random 24419 57.04% 42
chr22_KI270736v1_random 144844 79.62% 60
chr22_KI270737v1_random 8240 7.94% 25
chr22_KI270738v1_random 64892 65.30% 54
chr22_KI270739v1_random 745 1.01% 1
chrUn_GL000214v1 7847 5.70% 19
chrUn_GL000216v2 106024 60.03% 120
chrUn_GL000218v1 43561 27.03% 123
chrUn_GL000219v1 56496 31.53% 86
chrUn_GL000220v1 1482 0.92% 7
chrUn_GL000224v1 38648 21.51% 62
chrUn_KI270302v1 294 12.93% 1
chrUn_KI270311v1 187 1.51% 1
chrUn_KI270320v1 766 17.35% 2
chrUn_KI270330v1 206 12.47% 1
chrUn_KI270333v1 561 20.79% 3
chrUn_KI270336v1 196 19.10% 1
chrUn_KI270337v1 585 52.19% 1
chrUn_KI270417v1 887 43.42% 2
chrUn_KI270429v1 762 55.99% 1
chrUn_KI270435v1 28024 30.14% 50
chrUn_KI270438v1 65765 58.46% 48
chrUn_KI270442v1 258157 65.85% 215
chrUn_KI270448v1 5221 65.33% 6
chrUn_KI270465v1 399 22.49% 1
chrUn_KI270466v1 749 60.75% 2
chrUn_KI270467v1 1492 38.06% 1
chrUn_KI270468v1 2438 60.12% 2
chrUn_KI270507v1 4337 81.02% 4
chrUn_KI270508v1 1851 94.87% 2
chrUn_KI270509v1 1714 73.94% 2
chrUn_KI270510v1 1360 56.31% 3
chrUn_KI270511v1 4560 56.11% 2
chrUn_KI270512v1 9217 40.62% 18
chrUn_KI270515v1 4286 67.38% 3
chrUn_KI270516v1 884 68.00% 1
chrUn_KI270517v1 1753 53.89% 2
chrUn_KI270518v1 1786 81.70% 2
chrUn_KI270519v1 84340 61.06% 116
chrUn_KI270521v1 2308 30.20% 7
chrUn_KI270522v1 3119 54.97% 4
chrUn_KI270538v1 31628 34.64% 33
chrUn_KI270580v1 778 50.10% 2
chrUn_KI270582v1 161 2.48% 1
chrUn_KI270583v1 526 37.57% 1
chrUn_KI270584v1 3854 85.40% 6
chrUn_KI270587v1 1392 46.88% 1
chrUn_KI270588v1 4275 69.42% 7
chrUn_KI270589v1 4111 9.24% 4
chrUn_KI270590v1 3696 78.89% 6
chrUn_KI270591v1 4885 84.28% 2
chrUn_KI270593v1 1799 59.16% 4
chrUn_KI270741v1 600 0.38% 3
chrUn_KI270742v1 12498 6.69% 40
chrUn_KI270743v1 18322 8.70% 69
chrUn_KI270744v1 23419 13.90% 55
chrUn_KI270745v1 1188 2.84% 5
chrUn_KI270746v1 21331 32.08% 48
chrUn_KI270747v1 1185 0.60% 1
chrUn_KI270749v1 14583 9.19% 44
chrUn_KI270750v1 28768 19.33% 49
chrUn_KI270751v1 24004 15.92% 45
chrUn_KI270753v1 2373 3.77% 10
chrUn_KI270754v1 6642 16.53% 19
chrUn_KI270756v1 10456 13.14% 10
chrUn_KI270757v1 18150 25.47% 22
chrX 38803396 24.87% 67799
chrY 78386 0.14% 149
3247 contigs with no values (119071908 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 170023 130 93073 580.66 388
global segment-length histogram

Files

Filename Size md5
ENCFF556TDW.bed.gz 3.06 MB 656347ec4f78820d53d38034e7760171
ENCFF556TDW.tabix.bed.gz 1.54 MB fb924932b5c8d84cf15c8bb0f4a5f0f7
ENCFF556TDW.tabix.bed.gz.tbi 330.01 KB 664b29710a22af72f244f93c584cd21d
genomic_resource.yaml 3.71 KB 331dfcb4fa4986486d4c8948761b81b0
statistics/