Histone_ChIP-seq_ENCSR550GSE
Histone_ChIP-seq ENCSR550GSE [biosample_summary="Homo sapiens UCSF-4" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR550GSE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR550GSE [biosamplesummary="Homo sapiens UCSF-4" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN129XCY|/analyses/ENCAN129XCY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF860CKW|/files/ENCFF860CKW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 31777781 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF138RRZ|/files/ENCFF138RRZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18784821 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF044UQK|/files/ENCFF044UQK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF044UQK|/files/ENCFF044UQK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR550GSE | float |
Histone_ChIP-seq_ENCSR550GSE |
Histone_ChIP-seq ENCSR550GSE [biosample_summary="Homo sapiens UCSF-4" and target="H3K9me3"]
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[1.47, 44] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF556TDW.bed.gz | 3.06 MB | 656347ec4f78820d53d38034e7760171 |
| ENCFF556TDW.bed.gz.dvc | 101.0 B | 174fbccbc479afaff2d9d6e3b44922e4 |
| ENCFF556TDW.tabix.bed.gz | 1.54 MB | fb924932b5c8d84cf15c8bb0f4a5f0f7 |
| ENCFF556TDW.tabix.bed.gz.dvc | 107.0 B | b62780d092bae5bca66ac772c76ffd62 |
| ENCFF556TDW.tabix.bed.gz.tbi | 330.01 KB | 664b29710a22af72f244f93c584cd21d |
| ENCFF556TDW.tabix.bed.gz.tbi.dvc | 110.0 B | 5637507b72aa0d9fd4eab2dde47552b2 |
| genomic_resource.yaml | 3.71 KB | 331dfcb4fa4986486d4c8948761b81b0 |
| genomic_resource_original.yaml | 3.61 KB | 5e8756d49b8111070fad7604d98eb52b |
| statistics/ |