Resource

Id Histone_ChIP-seq/ENCSR549ZDHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR549ZDH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR549ZDH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years)
  • date_created: 2021-08-25T18:07:06.488713+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR549ZDH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (88 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR549ZDH float

Histone_ChIP-seq_ENCSR549ZDH
Histone_ChIP-seq ENCSR549ZDH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR549ZDH [1.95, 32.8]
n
49,489,389
mean
7.32
sd
4.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 494893891.54% 45511
chr1 5170257 2.08% 4639
chr2 3532012 1.46% 3284
chr3 2865802 1.45% 2660
chr4 1830676 0.96% 1720
chr5 2555406 1.41% 2349
chr6 2471012 1.45% 2220
chr7 2169293 1.36% 2178
chr8 1992386 1.37% 1880
chr9 2417402 1.75% 2178
chr10 2503931 1.87% 2215
chr11 3062580 2.27% 2715
chr12 2478138 1.86% 2301
chr13 1047896 0.92% 976
chr14 1729695 1.62% 1523
chr15 1636874 1.60% 1506
chr16 1781508 1.97% 1682
chr17 2952439 3.55% 2658
chr18 935005 1.16% 923
chr19 2334142 3.98% 2119
chr20 1505338 2.34% 1378
chr21 499319 1.07% 455
chr22 1332053 2.62% 1169
chrX 686225 0.44% 783
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45511 230 23962 1087.42 776
global segment-length histogram

Files

Filename Size md5
ENCFF595JKW.bed.gz 951.63 KB 89d60372f387412fc252b5e966ce6ea6
ENCFF595JKW.tabix.bed.gz 466.51 KB 2a3f3336e6783d05bffc2f6174410680
ENCFF595JKW.tabix.bed.gz.tbi 187.82 KB e8b6fe829a06b5f0a74c863b8b7edf7d
genomic_resource.yaml 1.7 KB e26da779af761c5d4da40b6c81d57670
statistics/