| Id: | Histone_ChIP-seq/ENCSR548QRE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR548QRE [biosamplesummary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (81 years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN295LBP|/analyses/ENCAN295LBP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF276EMZ|/files/ENCFF276EMZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF276EMZ|/files/ENCFF276EMZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.56. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR548QRE | float |
Histone_ChIP-seq_ENCSR548QRE |
Histone_ChIP-seq ENCSR548QRE [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K4me3"]
|
 |
[1.69, 60.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF154JNK.bed.gz | 915.63 KB | 77b850f60d4e729ae7283bed25c0a7cc |
| ENCFF154JNK.bed.gz.dvc | 100.0 B | 77260b46340484ca235ab923f3a797ae |
| ENCFF154JNK.tabix.bed.gz | 399.9 KB | f6d69a41b1e915c28d1b1c376d10af58 |
| ENCFF154JNK.tabix.bed.gz.dvc | 106.0 B | 76e1263a3b109647d63847da624f18b1 |
| ENCFF154JNK.tabix.bed.gz.tbi | 207.03 KB | d42d291bf962802d0a573f9eb7602166 |
| ENCFF154JNK.tabix.bed.gz.tbi.dvc | 110.0 B | 8726add40cd31067be7f9902aeccc294 |
| genomic_resource.yaml | 2.97 KB | ef0385fe335de9ba552f796a252f7870 |
| genomic_resource_original.yaml | 2.78 KB | db90592c0271f6e2eb8e35c0748cded9 |
| statistics/ |