Histone_ChIP-seq_ENCSR546SDM
Histone_ChIP-seq ENCSR546SDM [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR546SDM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR546SDM [biosamplesummary="Homo sapiens CD4-positive, alpha-beta T cell" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN097LNN|/analyses/ENCAN097LNN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF058CQG|/files/ENCFF058CQG/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 16419250 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF058CQG|/files/ENCFF058CQG/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF058CQG|/files/ENCFF058CQG/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR546SDM | float |
Histone_ChIP-seq_ENCSR546SDM |
Histone_ChIP-seq ENCSR546SDM [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell" and target="H3K27ac"]
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[2.34, 85.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF941FZG.bed.gz | 713.18 KB | e946617092678ccff96d871299aed8c7 |
| ENCFF941FZG.bed.gz.dvc | 100.0 B | 5de04b988adeabac464f79ae7f323781 |
| ENCFF941FZG.tabix.bed.gz | 323.44 KB | 0750aca45cd4d16218980391eeb84a3e |
| ENCFF941FZG.tabix.bed.gz.dvc | 106.0 B | be7230075a8c358583bee55e2eb9fd75 |
| ENCFF941FZG.tabix.bed.gz.tbi | 121.02 KB | 538e1d4e510339cba80beac63f122cd6 |
| ENCFF941FZG.tabix.bed.gz.tbi.dvc | 110.0 B | b86285509675751e7a7bf383fdd2c453 |
| genomic_resource.yaml | 3.36 KB | 2f6554526ca6a7114de149e0fd4ebee4 |
| genomic_resource_original.yaml | 3.23 KB | 62a65c0e5399414aa52db4a7c8a0277f |
| statistics/ |