Resource

Id Histone_ChIP-seq/ENCSR543YQFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR543YQF [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR543YQF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue female adult (53 years)
  • date_created: 2016-10-22T16:10:29.711021+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR543YQF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR543YQF float

Histone_ChIP-seq_ENCSR543YQF
Histone_ChIP-seq ENCSR543YQF [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR543YQF [1.69, 17.2]
n
85,088,207
mean
5.17
sd
1.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 850882072.64% 99439
chr1 8198879 3.29% 9735
chr1_KI270711v1_random 1422 3.37% 2
chr2 5515601 2.28% 7346
chr3 4684829 2.36% 6020
chr4 2643757 1.39% 3554
chr4_GL000008v2_random 801 0.38% 2
chr5 3462075 1.91% 4619
chr6 3285746 1.92% 4373
chr7 3933536 2.47% 4663
chr8 2551860 1.76% 3339
chr9 3901181 2.82% 4418
chr10 3482580 2.60% 4498
chr11 4558775 3.37% 4986
chr12 4824549 3.62% 5335
chr13 1359729 1.19% 2005
chr14 2846883 2.66% 3625
chr15 2850661 2.80% 3682
chr16 4723221 5.23% 4647
chr17 5836060 7.01% 5960
chr18 1183695 1.47% 1757
chr19 7424266 12.67% 6237
chr20 2843074 4.41% 3175
chr21 1094101 2.34% 1223
chr22 2937022 5.78% 2845
chrUn_GL000218v1 245 0.15% 1
chrUn_GL000219v1 4583 2.56% 11
chrX 938436 0.60% 1379
chrY 640 <0.01% 2
3338 contigs with no values (128484821 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99439 200 22399 855.68 588
global segment-length histogram

Files

Filename Size md5
ENCFF335SSR.bed.gz 2.01 MB 91675b80701d3a849e25d506a3d31b4a
ENCFF335SSR.tabix.bed.gz 995.99 KB 92e802c30156c92693a5529649b4dfe0
ENCFF335SSR.tabix.bed.gz.tbi 172.75 KB e8ef28815d09d717afd358770f534647
genomic_resource.yaml 2.01 KB c626e7b89d8e402ea93888e96d52363e
statistics/