Resource

Id Histone_ChIP-seq/ENCSR538GXYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR538GXY [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR538GXY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)
  • date_created: 2021-01-28T04:10:57.831426+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR538GXY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (87 years) with Alzheimer's disease, Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR538GXY float

Histone_ChIP-seq_ENCSR538GXY
Histone_ChIP-seq ENCSR538GXY [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR538GXY [1.76, 48.5]
n
53,539,191
mean
20.1
sd
10.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 535391911.66% 30547
chr1 5207001 2.09% 2956
chr2 3748428 1.55% 2128
chr3 3199023 1.61% 1742
chr4 2212451 1.16% 1222
chr5 2740159 1.51% 1507
chr6 3100599 1.82% 1776
chr7 2585832 1.62% 1553
chr8 2161412 1.49% 1223
chr9 2185131 1.58% 1288
chr10 2326047 1.74% 1331
chr11 2875804 2.13% 1564
chr12 2852191 2.14% 1555
chr13 1243902 1.09% 743
chr14 1712935 1.60% 941
chr15 1673403 1.64% 960
chr16 2045221 2.26% 1221
chr17 2889756 3.47% 1644
chr18 1016038 1.26% 589
chr19 3154236 5.38% 1876
chr20 1368360 2.12% 804
chr21 513271 1.10% 325
chr22 1189656 2.34% 697
chrX 1538335 0.99% 902
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30547 220 31395 1752.68 1366
global segment-length histogram

Files

Filename Size md5
ENCFF261NKP.bed.gz 748.11 KB 9dd4007fc3da75a57822141d8e42a253
ENCFF261NKP.tabix.bed.gz 340.36 KB 88e70e7cc186770a87b7ba83c2c46b59
ENCFF261NKP.tabix.bed.gz.tbi 182.67 KB c7c2c347366675363eee3620ebd4c3d8
genomic_resource.yaml 1.82 KB b911660a6183af6bf8dec2d5187f7bea
statistics/