Histone_ChIP-seq_ENCSR535GFO
Histone_ChIP-seq ENCSR535GFO [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR535GFO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR535GFO [biosamplesummary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN320YUD|/analyses/ENCAN320YUD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN320YUD|/analyses/ENCAN320YUD/} has in progress subobject document {a032d1aa-f626-42e4-8a48-fcfdaa87b9cc|/documents/a032d1aa-f626-42e4-8a48-fcfdaa87b9cc/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF302XVI|/files/ENCFF302XVI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF302XVI|/files/ENCFF302XVI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR535GFO | float |
Histone_ChIP-seq_ENCSR535GFO |
Histone_ChIP-seq ENCSR535GFO [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K27ac"]
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[1.54, 44.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF523WDP.bed.gz | 1.68 MB | 91c6a3136abb9bcf9371e3514107cd5b |
| ENCFF523WDP.bed.gz.dvc | 101.0 B | 61cda3300e42e4cecd501be25fd1bf48 |
| ENCFF523WDP.tabix.bed.gz | 716.89 KB | d4ad80b0afcc70dc770bfa8af8092e92 |
| ENCFF523WDP.tabix.bed.gz.dvc | 106.0 B | 70e2cd77e5981f7db6ac918f992ddcfd |
| ENCFF523WDP.tabix.bed.gz.tbi | 216.55 KB | 4393e7205f7cf144d2f870306c5461c8 |
| ENCFF523WDP.tabix.bed.gz.tbi.dvc | 110.0 B | 09665f5de60e99394d4ee0324c9e57d1 |
| genomic_resource.yaml | 2.99 KB | 44bc523804b9af2c185b501905fd9673 |
| genomic_resource_original.yaml | 2.85 KB | ed548fcf05e591f2d90350b6c7fbc150 |
| statistics/ |