Resource
| Id | Histone_ChIP-seq/ENCSR533LFC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR533LFC [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN910FRH|/analyses/ENCAN910FRH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF401XPZ|/files/ENCFF401XPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF401XPZ|/files/ENCFF401XPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.95. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR533LFC | float |
Histone_ChIP-seq_ENCSR533LFC |
Histone_ChIP-seq ENCSR533LFC [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K4me3"]
|
 |
[1.75, 79.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 67965024 | 2.11% | 39113 |
| chr1 | 6768414 | 2.72% | 3857 |
| chr2 | 4907504 | 2.03% | 2874 |
| chr3 | 4132605 | 2.08% | 2301 |
| chr4 | 2822750 | 1.48% | 1653 |
| chr5 | 3319672 | 1.83% | 1876 |
| chr6 | 4121780 | 2.41% | 2421 |
| chr7 | 3329639 | 2.09% | 1986 |
| chr8 | 2616297 | 1.80% | 1520 |
| chr9 | 2832530 | 2.05% | 1693 |
| chr10 | 3212422 | 2.40% | 1924 |
| chr11 | 3533282 | 2.62% | 1913 |
| chr12 | 3553096 | 2.67% | 1914 |
| chr13 | 1478303 | 1.29% | 885 |
| chr14 | 2114457 | 1.98% | 1190 |
| chr15 | 2177787 | 2.14% | 1275 |
| chr16 | 2569932 | 2.84% | 1508 |
| chr17 | 3853038 | 4.63% | 2162 |
| chr18 | 1230803 | 1.53% | 746 |
| chr19 | 3776134 | 6.44% | 2151 |
| chr20 | 1691739 | 2.63% | 998 |
| chr21 | 699616 | 1.50% | 435 |
| chr22 | 1425721 | 2.81% | 833 |
| chrX | 1797503 | 1.15% | 998 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 39113 | 210 | 26325 | 1737.66 | 1175 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF036ODU.bed.gz | 1023.42 KB | b37f2406ff7e5ebd0907f465bc0ede68 |
| ENCFF036ODU.tabix.bed.gz | 444.81 KB | 2049e2b05f3a085037b100dcb9c73763 |
| ENCFF036ODU.tabix.bed.gz.tbi | 202.85 KB | 5aa6101d1aaeca197c22725e05c09437 |
| genomic_resource.yaml | 2.78 KB | 8269b153d8af1028fd823bc0d00f2e90 |
| statistics/ |