Histone_ChIP-seq_ENCSR533LFC
Histone_ChIP-seq ENCSR533LFC [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR533LFC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR533LFC [biosamplesummary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN910FRH|/analyses/ENCAN910FRH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF401XPZ|/files/ENCFF401XPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF401XPZ|/files/ENCFF401XPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.95. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR533LFC | float |
Histone_ChIP-seq_ENCSR533LFC |
Histone_ChIP-seq ENCSR533LFC [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K4me3"]
|
|
[1.75, 79.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF036ODU.bed.gz | 1023.42 KB | b37f2406ff7e5ebd0907f465bc0ede68 |
| ENCFF036ODU.bed.gz.dvc | 101.0 B | 338811e6df768739f2aea65626c5cf48 |
| ENCFF036ODU.tabix.bed.gz | 444.81 KB | 2049e2b05f3a085037b100dcb9c73763 |
| ENCFF036ODU.tabix.bed.gz.dvc | 106.0 B | 7e5ab3231d9b04dcc794004dc7bcd46f |
| ENCFF036ODU.tabix.bed.gz.tbi | 202.85 KB | 5aa6101d1aaeca197c22725e05c09437 |
| ENCFF036ODU.tabix.bed.gz.tbi.dvc | 110.0 B | a52024705c23735e2e189d89a6f4c51d |
| genomic_resource.yaml | 2.78 KB | 8269b153d8af1028fd823bc0d00f2e90 |
| genomic_resource_original.yaml | 2.64 KB | c154710fc8f8879b902d86a83ff50d48 |
| statistics/ |