Resource

Id Histone_ChIP-seq/ENCSR533DREcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR533DRE [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR533DRE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:21.510772+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR533DRE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR533DRE float

Histone_ChIP-seq_ENCSR533DRE
Histone_ChIP-seq ENCSR533DRE [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR533DRE [1.3, 14.2]
n
868,290
mean
4.5
sd
1.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 8682900.03% 4540
chr1 38545 0.02% 231
chr1_KI270709v1_random 105 0.16% 1
chr2 44447 0.02% 259
chr3 23487 0.01% 136
chr4 28483 0.01% 169
chr4_GL000008v2_random 1373 0.65% 5
chr5 36489 0.02% 203
chr6 22063 0.01% 139
chr7 44566 0.03% 228
chr8 27397 0.02% 157
chr9 32811 0.02% 168
chr9_KI270718v1_random 279 0.73% 2
chr9_KI270720v1_random 396 1.01% 1
chr10 36749 0.03% 205
chr11 20023 0.01% 112
chr12 59218 0.04% 260
chr13 12733 0.01% 76
chr14 14744 0.01% 90
chr14_GL000225v1_random 481 0.23% 4
chr14_KI270722v1_random 404 0.21% 3
chr15 19348 0.02% 105
chr16 33033 0.04% 177
chr17 14639 0.02% 91
chr17_GL000205v2_random 438 0.24% 2
chr17_KI270729v1_random 3235 1.15% 12
chr17_KI270730v1_random 748 0.66% 5
chr18 12751 0.02% 76
chr19 215887 0.37% 972
chr20 18126 0.03% 95
chr21 28449 0.06% 143
chr22 15026 0.03% 80
chr22_KI270736v1_random 9119 5.01% 45
chr22_KI270738v1_random 124 0.12% 1
chrUn_GL000216v2 6581 3.73% 28
chrUn_GL000219v1 1050 0.59% 5
chrUn_GL000224v1 501 0.28% 2
chrUn_KI270435v1 105 0.11% 1
chrUn_KI270438v1 1013 0.90% 7
chrUn_KI270442v1 7737 1.97% 33
chrUn_KI270466v1 475 38.52% 1
chrUn_KI270467v1 672 17.14% 3
chrUn_KI270519v1 181 0.13% 1
chrUn_KI270589v1 1040 2.34% 3
chrUn_KI270591v1 473 8.16% 1
chrUn_KI270744v1 503 0.30% 3
chrUn_KI270746v1 105 0.16% 1
chrUn_KI270749v1 164 0.10% 1
chrUn_KI270750v1 304 0.20% 2
chrUn_KI270751v1 883 0.59% 2
chrUn_KI270756v1 328 0.41% 2
chrUn_KI270757v1 145 0.20% 1
chrX 28019 0.02% 177
chrY 2295 <0.01% 13
3313 contigs with no values (125287166 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 4540 105 1995 191.25 154
global segment-length histogram

Files

Filename Size md5
ENCFF946WOY.bed.gz 79.19 KB b2db308c30bebd16809667a1fe1eb29e
ENCFF946WOY.tabix.bed.gz 43.9 KB 31feca5592172a7aabea571c0b52d5d4
ENCFF946WOY.tabix.bed.gz.tbi 34.13 KB 9269e4a54ea248d538cb15563aa75cc9
genomic_resource.yaml 1.99 KB da56dee99e48344342a9df162562ad76
statistics/