| Id: | Histone_ChIP-seq/ENCSR532STE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR532STE [biosamplesummary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (83 years) with mild cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN808FLA|/analyses/ENCAN808FLA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF732KBA|/files/ENCFF732KBA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF732KBA|/files/ENCFF732KBA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR532STE | float |
Histone_ChIP-seq_ENCSR532STE |
Histone_ChIP-seq ENCSR532STE [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years)" and target="H3K4me3"]
|
 |
[1.75, 69.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF959JIF.bed.gz | 1.01 MB | 034f0e16482255b7049f1ee0371cabd8 |
| ENCFF959JIF.bed.gz.dvc | 101.0 B | c70f0400b58e15af29a4c398edea0f7c |
| ENCFF959JIF.tabix.bed.gz | 454.66 KB | ba6931f819c743bda45f47ca2d03c2a2 |
| ENCFF959JIF.tabix.bed.gz.dvc | 106.0 B | d90a04bdd7a43d71a6926163d83a2e03 |
| ENCFF959JIF.tabix.bed.gz.tbi | 225.4 KB | 2259aa90431ae0081dade6319edd9fc0 |
| ENCFF959JIF.tabix.bed.gz.tbi.dvc | 110.0 B | 7dfa8935b6fae39560747f7351e8b8da |
| genomic_resource.yaml | 2.99 KB | 21dd3989fd71dad5ff372607d40cdc81 |
| genomic_resource_original.yaml | 2.8 KB | 251b676b5ca61726aa42236497f77c6d |
| statistics/ |