Histone_ChIP-seq_ENCSR531QHM
Histone_ChIP-seq ENCSR531QHM [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR531QHM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR531QHM [biosamplesummary="Homo sapiens neural cell originated from H1" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN331AXD|/analyses/ENCAN331AXD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN331AXD|/analyses/ENCAN331AXD/} has in progress subobject document {6ba8e132-225a-49bd-9dc7-bfe3325a107d|/documents/6ba8e132-225a-49bd-9dc7-bfe3325a107d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF607URL|/files/ENCFF607URL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF607URL|/files/ENCFF607URL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.06. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR531QHM | float |
Histone_ChIP-seq_ENCSR531QHM |
Histone_ChIP-seq ENCSR531QHM [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K9ac"]
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[1.97, 99.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF076TJU.bed.gz | 934.64 KB | 498941179b469389bf0034da5ad99be5 |
| ENCFF076TJU.bed.gz.dvc | 100.0 B | 7549506a50a205ebc1d415deca613582 |
| ENCFF076TJU.tabix.bed.gz | 401.73 KB | 7872dddf9c59dabe59a287d4ca1c03c9 |
| ENCFF076TJU.tabix.bed.gz.dvc | 106.0 B | 5d33f5dc0d22a90202f63f96a504b707 |
| ENCFF076TJU.tabix.bed.gz.tbi | 189.18 KB | f26571737c1fbda86139aa928a4ce9c7 |
| ENCFF076TJU.tabix.bed.gz.tbi.dvc | 110.0 B | 8879843c7a6eb001477db938cc90faa3 |
| genomic_resource.yaml | 3.07 KB | 3ffd878029a89809b17acea1c8fe5a06 |
| genomic_resource_original.yaml | 2.94 KB | fbd71181aa35abbc4bd534c80c96ffcc |
| statistics/ |