Resource

Id Histone_ChIP-seq/ENCSR529ECZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR529ECZ [biosample_summary="Homo sapiens luminal epithelial cell of mammary gland female adult (33 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR529ECZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002326/
  • biosample_summary: Homo sapiens luminal epithelial cell of mammary gland female adult (33 years)
  • date_created: 2015-09-15T20:27:53.297580+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR529ECZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR529ECZ float

Histone_ChIP-seq_ENCSR529ECZ
Histone_ChIP-seq ENCSR529ECZ [biosample_summary="Homo sapiens luminal epithelial cell of mammary gland female adult (33 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR529ECZ [1.71, 14.4]
n
36,832,785
mean
4.51
sd
1.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 368327851.14% 100311
chr1 2018232 0.81% 5680
chr2 2143721 0.89% 6237
chr3 1813022 0.91% 5331
chr4 2115367 1.11% 6077
chr5 2207284 1.22% 6061
chr6 1466103 0.86% 4309
chr7 2777306 1.74% 7272
chr8 2009071 1.38% 5567
chr9 1166158 0.84% 3247
chr10 1567738 1.17% 4340
chr11 1472561 1.09% 4196
chr12 2013094 1.51% 5201
chr13 990873 0.87% 2881
chr14 940718 0.88% 2617
chr15 838699 0.82% 2174
chr16 1297741 1.44% 3388
chr17 625418 0.75% 1645
chr18 804090 1.00% 2333
chr19 3087246 5.27% 6436
chr20 689400 1.07% 1944
chr21 436986 0.94% 1165
chr22 408069 0.80% 1093
chrX 3943451 2.53% 11115
chrY 437 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100311 135 13071 367.19 298
global segment-length histogram

Files

Filename Size md5
ENCFF905SHY.bed.gz 1.62 MB 5f5d5537a9626756d2b221b4d547e32d
ENCFF905SHY.tabix.bed.gz 888.48 KB 32d7e158b2ab4aeade65740a60d85e63
ENCFF905SHY.tabix.bed.gz.tbi 363.42 KB 8b9323870756b4aaca37e2661a94b741
genomic_resource.yaml 1.58 KB ec76af96f3ded226605c2b620ab645df
statistics/