Resource

Id Histone_ChIP-seq/ENCSR528QDTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR528QDT [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR528QDT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001407/
  • biosample_summary: Homo sapiens germinal matrix tissue male embryo (20 weeks)
  • date_created: 2015-09-15T20:27:12.336910+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR528QDT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (20 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR528QDT float

Histone_ChIP-seq_ENCSR528QDT
Histone_ChIP-seq ENCSR528QDT [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR528QDT [1.8, 87.6]
n
48,069,010
mean
39.3
sd
20

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 480690101.49% 30222
chr1 4683637 1.88% 2921
chr2 3420293 1.41% 2171
chr3 2696925 1.36% 1649
chr4 1887873 0.99% 1131
chr5 2380132 1.31% 1469
chr6 2759952 1.62% 1687
chr7 2342549 1.47% 1514
chr8 1810297 1.25% 1137
chr9 1951045 1.41% 1308
chr10 1914506 1.43% 1273
chr11 2613054 1.93% 1624
chr12 2516663 1.89% 1492
chr13 1049687 0.92% 664
chr14 1660967 1.55% 1016
chr15 1586223 1.56% 1002
chr16 1842815 2.04% 1194
chr17 2665490 3.20% 1698
chr18 919273 1.14% 608
chr19 2944790 5.02% 1866
chr20 1273404 1.98% 832
chr21 460815 0.99% 296
chr22 1063950 2.09% 700
chrX 1572616 1.01% 943
chrY 52054 0.09% 27
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30222 195 41362 1590.53 1206
global segment-length histogram

Files

Filename Size md5
ENCFF236DEB.bed.gz 709.73 KB 3880c02e283fd0d8d9d6162252b3ff19
ENCFF236DEB.tabix.bed.gz 329.27 KB b0b1ec5c999d30f95716095dd54b214c
ENCFF236DEB.tabix.bed.gz.tbi 178.18 KB b697baa88b437c9fd447877ceda5116e
genomic_resource.yaml 1.51 KB 18ae3ea829abd7e95e4e17a0cf3a0ce7
statistics/