Histone_ChIP-seq_ENCSR527BFF
Histone_ChIP-seq ENCSR527BFF [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR527BFF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR527BFF [biosamplesummary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN737RFM|/analyses/ENCAN737RFM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF017GGC|/files/ENCFF017GGC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13775361 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF017GGC|/files/ENCFF017GGC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF017GGC|/files/ENCFF017GGC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR527BFF | float |
Histone_ChIP-seq_ENCSR527BFF |
Histone_ChIP-seq ENCSR527BFF [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K27me3"]
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[1.84, 7.51] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF653SWP.bed.gz | 25.69 KB | 13a24c6dfde0f6a2fcba9ff84662a53a |
| ENCFF653SWP.bed.gz.dvc | 99.0 B | ff10039a531ab86093f26abdc85ee22c |
| ENCFF653SWP.tabix.bed.gz | 13.37 KB | 1e92a22dd77d27ba27bbf53c54ad9eb1 |
| ENCFF653SWP.tabix.bed.gz.dvc | 105.0 B | a5e232c000161e7fc2b630367b5fab48 |
| ENCFF653SWP.tabix.bed.gz.tbi | 17.04 KB | 881a2fa8f1c3a7eeabe4205f2d812b5d |
| ENCFF653SWP.tabix.bed.gz.tbi.dvc | 109.0 B | a3036a5f631d713ab48661bb272f01c9 |
| genomic_resource.yaml | 3.22 KB | 64134e149d909680c211a5c577c7fa35 |
| genomic_resource_original.yaml | 3.09 KB | 152a7a2e7192ab503b5cd3752b4cd70e |
| statistics/ |