| Id: | Histone_ChIP-seq/ENCSR525XER |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR525XER [biosamplesummary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: female adult output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN970CFH|/analyses/ENCAN970CFH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF613REE|/files/ENCFF613REE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 28102220 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF141RAM|/files/ENCFF141RAM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 30858986 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF260EXP|/files/ENCFF260EXP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF260EXP|/files/ENCFF260EXP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.79. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR525XER | float |
Histone_ChIP-seq_ENCSR525XER |
Histone_ChIP-seq ENCSR525XER [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K9me3"]
|
 |
[1.46, 12.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF089EQE.bed.gz | 1.31 MB | e02725c4d469de3388a9bb836c4fb529 |
| ENCFF089EQE.bed.gz.dvc | 101.0 B | 0762c19fda2cac97ad07484fddc7eb47 |
| ENCFF089EQE.tabix.bed.gz | 720.48 KB | a7fe72ede48b2c1eb78d2932aa9ae830 |
| ENCFF089EQE.tabix.bed.gz.dvc | 106.0 B | 58a256e15d378b174210318f9b1d8e98 |
| ENCFF089EQE.tabix.bed.gz.tbi | 230.97 KB | caf580844dab211dc7fddad1c03d824a |
| ENCFF089EQE.tabix.bed.gz.tbi.dvc | 110.0 B | 3826f766e5bb37a2b4a00b8f35b4e6b6 |
| genomic_resource.yaml | 3.97 KB | f52f3596550c09c2e6ca1c1625aa95ad |
| genomic_resource_original.yaml | 3.8 KB | de348bef3cfad8c99665fcb6114cb3c2 |
| statistics/ |