Resource
| Id | Histone_ChIP-seq/ENCSR524VDR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR524VDR [biosample_summary="Homo sapiens BLaER1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR524VDR | float |
Histone_ChIP-seq_ENCSR524VDR |
Histone_ChIP-seq ENCSR524VDR [biosample_summary="Homo sapiens BLaER1" and target="H3K36me3"]
|
 |
[1.39, 22.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 237962254 | 7.40% | 247931 |
| chr1 | 22577102 | 9.07% | 23324 |
| chr1_KI270711v1_random | 6729 | 15.94% | 6 |
| chr2 | 18223230 | 7.52% | 20684 |
| chr3 | 14109524 | 7.12% | 15992 |
| chr4 | 8982405 | 4.72% | 11531 |
| chr5 | 12110235 | 6.67% | 13851 |
| chr6 | 10030698 | 5.87% | 12158 |
| chr7 | 12315466 | 7.73% | 13351 |
| chr8 | 10845126 | 7.47% | 11295 |
| chr9 | 10481658 | 7.57% | 10619 |
| chr10 | 11203465 | 8.37% | 12225 |
| chr11 | 10916875 | 8.08% | 10746 |
| chr12 | 12002315 | 9.01% | 12016 |
| chr13 | 4877502 | 4.26% | 6075 |
| chr14 | 7618991 | 7.12% | 8536 |
| chr14_GL000194v1_random | 5040 | 2.63% | 9 |
| chr15 | 8441535 | 8.28% | 9269 |
| chr16 | 10828059 | 11.99% | 9065 |
| chr17 | 13353865 | 16.04% | 11947 |
| chr17_GL000205v2_random | 2414 | 1.30% | 6 |
| chr18 | 4381819 | 5.45% | 5303 |
| chr19 | 13665241 | 23.31% | 9102 |
| chr20 | 6913217 | 10.73% | 6304 |
| chr21 | 3061418 | 6.55% | 3158 |
| chr22 | 6248298 | 12.30% | 4979 |
| chrUn_GL000195v1 | 5339 | 2.92% | 14 |
| chrUn_GL000219v1 | 19110 | 10.66% | 28 |
| chrUn_KI270438v1 | 1642 | 1.46% | 5 |
| chrUn_KI270751v1 | 254 | 0.17% | 1 |
| chrUn_KI270754v1 | 258 | 0.64% | 1 |
| chrX | 4731363 | 3.03% | 6326 |
| chrY | 2061 | <0.01% | 5 |
| 3334 contigs with no values (127992283 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 247931 | 250 | 45364 | 959.79 | 533 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF655CJC.bed.gz | 4.84 MB | c4e5375d9aa158f14ec99d4daf14b9c5 |
| ENCFF655CJC.tabix.bed.gz | 2.35 MB | 76cdf08f962acf0cbac2cb1d4de5045c |
| ENCFF655CJC.tabix.bed.gz.tbi | 220.44 KB | 0e07fe99815163f3ca91e2568eeafa65 |
| genomic_resource.yaml | 2.56 KB | 00aaab3a22c2a57a249960642273cc1a |
| statistics/ |