Resource
| Id | Histone_ChIP-seq/ENCSR523ENE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR523ENE [biosample_summary="Homo sapiens IMR-90" and target="H2BK12ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN390KYZ|/analyses/ENCAN390KYZ/} has in progress subobject document {8a717c3d-f3d9-4010-909c-763d4f4596b2|/documents/8a717c3d-f3d9-4010-909c-763d4f4596b2/} audit_internal_action: Released analysis {ENCAN390KYZ|/analyses/ENCAN390KYZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF053HXY|/files/ENCFF053HXY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12851123 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK12ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF662NJI|/files/ENCFF662NJI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17445804 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK12ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR523ENE | float |
Histone_ChIP-seq_ENCSR523ENE |
Histone_ChIP-seq ENCSR523ENE [biosample_summary="Homo sapiens IMR-90" and target="H2BK12ac"]
|
 |
[1.72, 34.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 85568330 | 2.66% | 190721 |
| chr1 | 7592871 | 3.05% | 16765 |
| chr2 | 8244888 | 3.40% | 17910 |
| chr3 | 5768757 | 2.91% | 12894 |
| chr4 | 4102099 | 2.16% | 10054 |
| chr5 | 5504834 | 3.03% | 12267 |
| chr6 | 5158302 | 3.02% | 12516 |
| chr7 | 4146030 | 2.60% | 9697 |
| chr8 | 4473080 | 3.08% | 10162 |
| chr9 | 3905542 | 2.82% | 8453 |
| chr10 | 4127893 | 3.09% | 9141 |
| chr11 | 4840846 | 3.58% | 10325 |
| chr12 | 4250681 | 3.19% | 9781 |
| chr13 | 2362296 | 2.07% | 5654 |
| chr14 | 2722973 | 2.54% | 5898 |
| chr15 | 3318653 | 3.25% | 6913 |
| chr16 | 2351817 | 2.60% | 4674 |
| chr17 | 3438960 | 4.13% | 7015 |
| chr18 | 2072403 | 2.58% | 4796 |
| chr19 | 1477632 | 2.52% | 3277 |
| chr20 | 2089793 | 3.24% | 4304 |
| chr21 | 1244231 | 2.66% | 2709 |
| chr22 | 1350877 | 2.66% | 2791 |
| chrX | 1022872 | 0.66% | 2725 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 190721 | 120 | 8816 | 448.66 | 327 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF507NUN.bed.gz | 4.44 MB | 2961490dd121333dc6807dc1f29a2db2 |
| ENCFF507NUN.tabix.bed.gz | 1.92 MB | d98a442495467816ffc8ff7c73bb7c28 |
| ENCFF507NUN.tabix.bed.gz.tbi | 291.12 KB | 961a930e54ae312495977af0471188b3 |
| genomic_resource.yaml | 2.6 KB | 78ead044dad6103ff938f65d033fa75a |
| statistics/ |