Histone_ChIP-seq_ENCSR522EGW
Histone_ChIP-seq ENCSR522EGW [biosample_summary="Homo sapiens B cell" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR522EGW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR522EGW [biosamplesummary="Homo sapiens B cell" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN817TRL|/analyses/ENCAN817TRL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF123SLZ|/files/ENCFF123SLZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8965445 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF302OGB|/files/ENCFF302OGB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8176357 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF302OGB|/files/ENCFF302OGB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF302OGB|/files/ENCFF302OGB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR522EGW | float |
Histone_ChIP-seq_ENCSR522EGW |
Histone_ChIP-seq ENCSR522EGW [biosample_summary="Homo sapiens B cell" and target="H3K27me3"]
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[2.39, 5.32] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF394LUW.bed.gz | 15.5 KB | 5748318ed867a5638b83221985530f8a |
| ENCFF394LUW.bed.gz.dvc | 99.0 B | 3c8061b3e328ceb031fdbe8a4cfe59cf |
| ENCFF394LUW.tabix.bed.gz | 9.18 KB | e83825522ca0fa351173c03769533656 |
| ENCFF394LUW.tabix.bed.gz.dvc | 104.0 B | 4a3ceb4dee7948848a8d4e2865f61f05 |
| ENCFF394LUW.tabix.bed.gz.tbi | 11.38 KB | 4bf5a95c82a9b3d3ff3fa453af9201bb |
| ENCFF394LUW.tabix.bed.gz.tbi.dvc | 109.0 B | fd03a359296742fdfa7e2b40178915b2 |
| genomic_resource.yaml | 3.75 KB | 6c4888b10d6dd05783e6adef7b19c543 |
| genomic_resource_original.yaml | 3.64 KB | f7f93106e2a500045f37fd971425baff |
| statistics/ |