Histone_ChIP-seq_ENCSR521GRK
Histone_ChIP-seq ENCSR521GRK [biosample_summary="Homo sapiens PC-9" and target="H3K9me2"]
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| Id: | Histone_ChIP-seq/ENCSR521GRK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR521GRK [biosamplesummary="Homo sapiens PC-9" and target="H3K9me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN055IFT|/analyses/ENCAN055IFT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF332SLT|/files/ENCFF332SLT/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 31625868 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF185YPL|/files/ENCFF185YPL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 24632349 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF185YPL|/files/ENCFF185YPL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF185YPL|/files/ENCFF185YPL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.68. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR521GRK | float |
Histone_ChIP-seq_ENCSR521GRK |
Histone_ChIP-seq ENCSR521GRK [biosample_summary="Homo sapiens PC-9" and target="H3K9me2"]
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[1.49, 4.35] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF850NAU.bed.gz | 233.68 KB | c90418d4660d37cd9d9c5d9d9c4ea5ec |
| ENCFF850NAU.bed.gz.dvc | 100.0 B | 2546695ea8c3c0f5cd0bb775a7f332b3 |
| ENCFF850NAU.tabix.bed.gz | 109.43 KB | f78c404bff796111e97368df92d5a846 |
| ENCFF850NAU.tabix.bed.gz.dvc | 106.0 B | 88f269e72de802558d78bf0fa00e9dad |
| ENCFF850NAU.tabix.bed.gz.tbi | 87.0 KB | 7e7d331d8501a1501b4b7bdc040846cb |
| ENCFF850NAU.tabix.bed.gz.tbi.dvc | 109.0 B | 54b5ded9e2cda674d82e382fb2c63d66 |
| genomic_resource.yaml | 3.7 KB | 8b40b6be9e514f934706fcda5546366d |
| genomic_resource_original.yaml | 3.59 KB | 7bbe63ed1a917e2b43f7b03569e79172 |
| statistics/ |