Resource
| Id | Histone_ChIP-seq/ENCSR521FND |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR521FND [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (18 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN311TBQ|/analyses/ENCAN311TBQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF557QDG|/files/ENCFF557QDG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 41050185 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR521FND | float |
Histone_ChIP-seq_ENCSR521FND |
Histone_ChIP-seq ENCSR521FND [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K4me1"]
|
 |
[1.69, 15.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 134088115 | 4.17% | 188476 |
| chr1 | 13738585 | 5.52% | 18352 |
| chr1_KI270713v1_random | 880 | 2.16% | 2 |
| chr2 | 11311624 | 4.67% | 16126 |
| chr3 | 9458314 | 4.77% | 13266 |
| chr4 | 6122103 | 3.22% | 9644 |
| chr5 | 7495485 | 4.13% | 10758 |
| chr6 | 8008798 | 4.69% | 11782 |
| chr7 | 6173719 | 3.87% | 9240 |
| chr8 | 6113070 | 4.21% | 8824 |
| chr9 | 5738489 | 4.15% | 8026 |
| chr10 | 6655994 | 4.97% | 9135 |
| chr11 | 7198958 | 5.33% | 9619 |
| chr12 | 6877474 | 5.16% | 9864 |
| chr13 | 3104006 | 2.71% | 4848 |
| chr14 | 4341999 | 4.06% | 6002 |
| chr15 | 4733659 | 4.64% | 6467 |
| chr15_KI270727v1_random | 194 | 0.04% | 1 |
| chr16 | 4250731 | 4.71% | 5489 |
| chr17 | 5962651 | 7.16% | 7647 |
| chr17_GL000205v2_random | 5641 | 3.04% | 7 |
| chr18 | 3138033 | 3.90% | 4552 |
| chr19 | 3637938 | 6.21% | 4872 |
| chr20 | 3955553 | 6.14% | 5187 |
| chr21 | 1533452 | 3.28% | 2145 |
| chr22 | 2699231 | 5.31% | 3283 |
| chrUn_GL000195v1 | 2736 | 1.50% | 4 |
| chrX | 1828798 | 1.17% | 3334 |
| 3339 contigs with no values (185447020 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 188476 | 140 | 13982 | 711.43 | 558 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF785VNJ.bed.gz | 3.99 MB | 47683a00532dd9bc2e64a87c3128422a |
| ENCFF785VNJ.tabix.bed.gz | 1.87 MB | 70201b0887fd17584eed183662dbeb00 |
| ENCFF785VNJ.tabix.bed.gz.tbi | 413.93 KB | 6634017e66655cfa64d531350081e095 |
| genomic_resource.yaml | 2.01 KB | c20e023a49616406ae2f9fba078cce2c |
| statistics/ |