Histone_ChIP-seq_ENCSR521AIV
Histone_ChIP-seq ENCSR521AIV [biosample_summary="Homo sapiens KMS-11" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR521AIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR521AIV [biosamplesummary="Homo sapiens KMS-11" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN614SXG|/analyses/ENCAN614SXG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF500IQP|/files/ENCFF500IQP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF500IQP|/files/ENCFF500IQP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR521AIV | float |
Histone_ChIP-seq_ENCSR521AIV |
Histone_ChIP-seq ENCSR521AIV [biosample_summary="Homo sapiens KMS-11" and target="H3K9ac"]
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[1.3, 67.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF892LMZ.bed.gz | 727.42 KB | 2cd8aed2c5f1f81d90d4457f2384fdf4 |
| ENCFF892LMZ.bed.gz.dvc | 100.0 B | 3a91623bc483e314b0632b51dde9c64f |
| ENCFF892LMZ.tabix.bed.gz | 313.96 KB | 73ecb2f08c5387259865653e7cb8f2be |
| ENCFF892LMZ.tabix.bed.gz.dvc | 106.0 B | a0f983003096f43eb1ea019ac69a1749 |
| ENCFF892LMZ.tabix.bed.gz.tbi | 160.13 KB | 1093c17837349d82997d881d14ff1b09 |
| ENCFF892LMZ.tabix.bed.gz.tbi.dvc | 110.0 B | 2f7146415044c3a24d292bf84fcec44f |
| genomic_resource.yaml | 2.67 KB | f9c8ec8587bb5d5dacb0758a7aa4e2fc |
| genomic_resource_original.yaml | 2.56 KB | 615aadcfcf918b364bc0fada49e98a45 |
| statistics/ |