Resource
| Id | Histone_ChIP-seq/ENCSR520BIM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR520BIM [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN716CII|/analyses/ENCAN716CII/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF708ZJH|/files/ENCFF708ZJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF708ZJH|/files/ENCFF708ZJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.18. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR520BIM | float |
Histone_ChIP-seq_ENCSR520BIM |
Histone_ChIP-seq ENCSR520BIM [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K27ac"]
|
 |
[1.34, 73.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 109903685 | 3.42% | 78896 |
| chr1 | 11299138 | 4.54% | 7807 |
| chr1_KI270713v1_random | 2081 | 5.11% | 5 |
| chr1_KI270714v1_random | 279 | 0.67% | 1 |
| chr2 | 8186515 | 3.38% | 6127 |
| chr3 | 6713413 | 3.39% | 4829 |
| chr4 | 4755184 | 2.50% | 3585 |
| chr5 | 5144462 | 2.83% | 3859 |
| chr6 | 6157730 | 3.61% | 4582 |
| chr7 | 5252111 | 3.30% | 3928 |
| chr8 | 4568988 | 3.15% | 3278 |
| chr9 | 4898732 | 3.54% | 3437 |
| chr10 | 5723785 | 4.28% | 4132 |
| chr11 | 5728241 | 4.24% | 4015 |
| chr12 | 5407707 | 4.06% | 3907 |
| chr13 | 2631624 | 2.30% | 2033 |
| chr14 | 3803388 | 3.55% | 2672 |
| chr15 | 3939268 | 3.86% | 2732 |
| chr16 | 4057328 | 4.49% | 2848 |
| chr17 | 5878889 | 7.06% | 3853 |
| chr17_GL000205v2_random | 1850 | 1.00% | 3 |
| chr18 | 2168443 | 2.70% | 1583 |
| chr19 | 4616450 | 7.88% | 3099 |
| chr20 | 2967870 | 4.61% | 2141 |
| chr21 | 1259379 | 2.70% | 975 |
| chr22 | 2568307 | 5.05% | 1643 |
| chrUn_GL000195v1 | 3665 | 2.00% | 4 |
| chrUn_GL000219v1 | 4223 | 2.36% | 4 |
| chrUn_GL000220v1 | 325 | 0.20% | 1 |
| chrUn_KI270337v1 | 354 | 31.58% | 1 |
| chrUn_KI270442v1 | 248 | 0.06% | 1 |
| chrUn_KI270466v1 | 957 | 77.62% | 1 |
| chrUn_KI270467v1 | 1516 | 38.67% | 1 |
| chrX | 2082827 | 1.33% | 1735 |
| chrY | 78408 | 0.14% | 74 |
| 3332 contigs with no values (127886801 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 78896 | 205 | 41354 | 1393.02 | 882 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF292JKC.bed.gz | 1.97 MB | 635a31bdc69fd6d905c44274ad87ae0b |
| ENCFF292JKC.tabix.bed.gz | 877.58 KB | 270c1420e919e443dede29e3ac309810 |
| ENCFF292JKC.tabix.bed.gz.tbi | 262.23 KB | 8f25a7292e8103bb366340eaeebcdce2 |
| genomic_resource.yaml | 2.76 KB | 3c186b7e32042b524265e7be369636d0 |
| statistics/ |