Histone_ChIP-seq_ENCSR520BIM
Histone_ChIP-seq ENCSR520BIM [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K27ac"]
×
| Id: | Histone_ChIP-seq/ENCSR520BIM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR520BIM [biosamplesummary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN716CII|/analyses/ENCAN716CII/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF708ZJH|/files/ENCFF708ZJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF708ZJH|/files/ENCFF708ZJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.18. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR520BIM | float |
Histone_ChIP-seq_ENCSR520BIM |
Histone_ChIP-seq ENCSR520BIM [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K27ac"]
|
|
[1.34, 73.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292JKC.bed.gz | 1.97 MB | 635a31bdc69fd6d905c44274ad87ae0b |
| ENCFF292JKC.bed.gz.dvc | 101.0 B | 627ec5c35cbc42cfa76d2256cf3e24da |
| ENCFF292JKC.tabix.bed.gz | 877.58 KB | 270c1420e919e443dede29e3ac309810 |
| ENCFF292JKC.tabix.bed.gz.dvc | 106.0 B | 21719555185b6d5e0d9be7cb9eec89d5 |
| ENCFF292JKC.tabix.bed.gz.tbi | 262.23 KB | 8f25a7292e8103bb366340eaeebcdce2 |
| ENCFF292JKC.tabix.bed.gz.tbi.dvc | 110.0 B | 267e0d78906340fb4f2fe6da783adb9b |
| genomic_resource.yaml | 2.76 KB | 3c186b7e32042b524265e7be369636d0 |
| genomic_resource_original.yaml | 2.62 KB | 09003fccfc5f63bf59c40233f3a65a34 |
| statistics/ |