Resource
| Id | Histone_ChIP-seq/ENCSR518TWC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR518TWC [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN080TAG|/analyses/ENCAN080TAG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF995OML|/files/ENCFF995OML/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 43542163 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR518TWC | float |
Histone_ChIP-seq_ENCSR518TWC |
Histone_ChIP-seq ENCSR518TWC [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K36me3"]
|
 |
[1.67, 18.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 182398800 | 5.67% | 90732 |
| chr1 | 18763641 | 7.54% | 8698 |
| chr2 | 15392269 | 6.36% | 7417 |
| chr3 | 12116730 | 6.11% | 6050 |
| chr4 | 7541752 | 3.96% | 4140 |
| chr5 | 9225016 | 5.08% | 4339 |
| chr6 | 8839886 | 5.18% | 4755 |
| chr7 | 8346930 | 5.24% | 4796 |
| chr8 | 6244323 | 4.30% | 3345 |
| chr9 | 7579882 | 5.48% | 3875 |
| chr10 | 8616866 | 6.44% | 4387 |
| chr11 | 8776630 | 6.50% | 4076 |
| chr12 | 10103912 | 7.58% | 4499 |
| chr13 | 4003006 | 3.50% | 2409 |
| chr14 | 6647727 | 6.21% | 3060 |
| chr15 | 7168945 | 7.03% | 3547 |
| chr16 | 7185068 | 7.95% | 3369 |
| chr17 | 10128271 | 12.17% | 4476 |
| chr18 | 3308019 | 4.12% | 1824 |
| chr19 | 8209813 | 14.01% | 4131 |
| chr20 | 4898758 | 7.60% | 2348 |
| chr21 | 2033406 | 4.35% | 939 |
| chr22 | 4200170 | 8.27% | 1959 |
| chrX | 3067780 | 1.97% | 2293 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 90732 | 200 | 127796 | 2010.3 | 1005 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF242WDY.bed.gz | 1.93 MB | 0af1b29bdb786a776c6455af27f12279 |
| ENCFF242WDY.tabix.bed.gz | 936.52 KB | c1e1f2bb74caa1187c0262899e2d4b36 |
| ENCFF242WDY.tabix.bed.gz.tbi | 141.78 KB | e54578cf5d8f27f0fb7de4568a1cf692 |
| genomic_resource.yaml | 2.0 KB | 59ab42ce6fe515759042ebdde2771550 |
| statistics/ |