Resource
| Id | Histone_ChIP-seq/ENCSR518LDN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR518LDN [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN164ZQB|/analyses/ENCAN164ZQB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN164ZQB|/analyses/ENCAN164ZQB/} has in progress subobject document {c26f5f7d-108d-4169-ad3a-67aa5b6745f7|/documents/c26f5f7d-108d-4169-ad3a-67aa5b6745f7/} audit_warning: Processed alignments file {ENCFF944PKD|/files/ENCFF944PKD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 36304772 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR518LDN | float |
Histone_ChIP-seq_ENCSR518LDN |
Histone_ChIP-seq ENCSR518LDN [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K79me2"]
|
 |
[1.55, 29] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 140607812 | 4.37% | 58366 |
| chr1 | 13841532 | 5.56% | 5418 |
| chr2 | 11288765 | 4.66% | 4385 |
| chr3 | 8980760 | 4.53% | 3893 |
| chr4 | 6751490 | 3.55% | 3076 |
| chr5 | 7381796 | 4.07% | 2707 |
| chr6 | 7566568 | 4.43% | 3178 |
| chr7 | 7706655 | 4.84% | 3276 |
| chr8 | 6136404 | 4.23% | 2398 |
| chr9 | 6439323 | 4.65% | 3002 |
| chr10 | 6753918 | 5.05% | 2790 |
| chr11 | 6240330 | 4.62% | 2758 |
| chr12 | 7169220 | 5.38% | 2958 |
| chr13 | 3414025 | 2.99% | 1477 |
| chr14 | 4674257 | 4.37% | 1905 |
| chr15 | 4929504 | 4.83% | 1927 |
| chr16 | 4517945 | 5.00% | 1924 |
| chr17 | 6213140 | 7.46% | 2568 |
| chr18 | 3473417 | 4.32% | 1317 |
| chr19 | 5399920 | 9.21% | 2298 |
| chr20 | 3311101 | 5.14% | 1254 |
| chr21 | 1397560 | 2.99% | 519 |
| chr22 | 3221347 | 6.34% | 1416 |
| chrX | 3798835 | 2.43% | 1922 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 58366 | 193 | 164062 | 2409.07 | 1017 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF747MUM.bed.gz | 1.37 MB | d4387c59c5347d82c22a3db2f636f0ea |
| ENCFF747MUM.tabix.bed.gz | 632.21 KB | 5d02733b597045fb50256fbc5db38fde |
| ENCFF747MUM.tabix.bed.gz.tbi | 116.33 KB | 667354371781f42ccd91a5dea323e50f |
| genomic_resource.yaml | 2.22 KB | 71b02d59bdf8f55170f1aed3f0155d55 |
| statistics/ |