Resource

Id Histone_ChIP-seq/ENCSR516QFOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR516QFO [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR516QFO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (37 years)
  • date_created: 2017-12-06T21:17:52.023962+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR516QFO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR516QFO float

Histone_ChIP-seq_ENCSR516QFO
Histone_ChIP-seq ENCSR516QFO [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR516QFO [1.4, 8.53]
n
180,319,348
mean
3.22
sd
0.972

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1803193485.60% 149001
chr1 18101259 7.27% 14389
chr2 14776944 6.10% 12574
chr3 12071105 6.09% 10118
chr4 8461386 4.45% 7512
chr5 9420622 5.19% 7944
chr6 10543539 6.17% 9075
chr7 8553215 5.37% 7433
chr8 7445418 5.13% 6466
chr9 8306465 6.00% 6757
chr10 9396000 7.02% 7701
chr11 9521237 7.05% 7597
chr12 9200219 6.90% 7472
chr13 4136127 3.62% 3618
chr14 6471413 6.05% 5180
chr15 6641198 6.51% 5218
chr16 6139962 6.80% 4899
chr17 9033640 10.85% 6790
chr18 3490861 4.34% 3095
chr19 6075106 10.36% 4766
chr20 4940469 7.67% 3910
chr21 2135485 4.57% 1774
chr22 3811793 7.50% 2878
chrX 1592461 1.02% 1761
chrY 53424 0.09% 74
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 149001 245 27260 1210.19 852
global segment-length histogram

Files

Filename Size md5
ENCFF526FXD.bed.gz 3.69 MB fe1ebe1b0d4213af0b5b725aadc4c08e
ENCFF526FXD.tabix.bed.gz 1.59 MB 0bdfcac5951f88c867aab296242c1f85
ENCFF526FXD.tabix.bed.gz.tbi 338.74 KB 2ae184216659e7eb0fa768beb38e4f99
genomic_resource.yaml 1.51 KB a4b84781e11d75b7232089f05343c6ce
statistics/