Histone_ChIP-seq_ENCSR516LQO
Histone_ChIP-seq ENCSR516LQO [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR516LQO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR516LQO [biosamplesummary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN791OOM|/analyses/ENCAN791OOM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN791OOM|/analyses/ENCAN791OOM/} has in progress subobject document {a554fb14-e179-4d41-a80b-996ddfb6a286|/documents/a554fb14-e179-4d41-a80b-996ddfb6a286/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF206AGD|/files/ENCFF206AGD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR516LQO | float |
Histone_ChIP-seq_ENCSR516LQO |
Histone_ChIP-seq ENCSR516LQO [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K27ac"]
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[1.62, 59] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF717AYR.bed.gz | 2.1 MB | acaf03b32f7d0234a2f80341f8866a76 |
| ENCFF717AYR.bed.gz.dvc | 101.0 B | f9a1917ac07f042ee48f83ad4354caad |
| ENCFF717AYR.tabix.bed.gz | 943.63 KB | efa99a41dafdf41cd380057cd7aed563 |
| ENCFF717AYR.tabix.bed.gz.dvc | 106.0 B | bed03f42989c31346dd5331cc0acc2a9 |
| ENCFF717AYR.tabix.bed.gz.tbi | 255.17 KB | 753ccbeed5352aea231eaa8a121558db |
| ENCFF717AYR.tabix.bed.gz.tbi.dvc | 110.0 B | f6f5e894a671ef3ec2592e0dc5f6bda5 |
| genomic_resource.yaml | 2.36 KB | 3d67a7989409d73c6b7391a272112faf |
| genomic_resource_original.yaml | 2.22 KB | 11d39a79dd199384e9cb66d1a917ecef |
| statistics/ |