Histone_ChIP-seq_ENCSR515PKY
Histone_ChIP-seq ENCSR515PKY [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR515PKY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR515PKY [biosamplesummary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN177SYZ|/analyses/ENCAN177SYZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF971VRD|/files/ENCFF971VRD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF971VRD|/files/ENCFF971VRD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR515PKY | float |
Histone_ChIP-seq_ENCSR515PKY |
Histone_ChIP-seq ENCSR515PKY [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me3"]
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[1.41, 52.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF235XSR.bed.gz | 897.65 KB | 341ebb6c5d38a02fa7e9afba5b601f6d |
| ENCFF235XSR.bed.gz.dvc | 100.0 B | 54652de9e415a1846f2cc7fe12dc6887 |
| ENCFF235XSR.tabix.bed.gz | 377.39 KB | d7e94ebc83d20029dee92aa832ee570d |
| ENCFF235XSR.tabix.bed.gz.dvc | 106.0 B | 1003a3600e8132668960ba6e4b184f63 |
| ENCFF235XSR.tabix.bed.gz.tbi | 192.83 KB | 871f6bc4d57ec866c5ab67f5922ef0c8 |
| ENCFF235XSR.tabix.bed.gz.tbi.dvc | 110.0 B | ac8e44f4d4841cccc6a813e021524dc4 |
| genomic_resource.yaml | 2.76 KB | ba9437e8787545be6e1d672f4546deb2 |
| genomic_resource_original.yaml | 2.62 KB | 258c4d6a4a95881fdc4d2f0c1745ca93 |
| statistics/ |