Resource
| Id | Histone_ChIP-seq/ENCSR512CSM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR512CSM [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: embryo (15 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN027XBA|/analyses/ENCAN027XBA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF451LXC|/files/ENCFF451LXC/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 14453198 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR512CSM | float |
Histone_ChIP-seq_ENCSR512CSM |
Histone_ChIP-seq ENCSR512CSM [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K4me1"]
|
 |
[1.63, 17.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 115122508 | 3.58% | 119954 |
| chr1 | 10975885 | 4.41% | 11112 |
| chr2 | 9653689 | 3.99% | 10150 |
| chr3 | 8383506 | 4.23% | 8651 |
| chr4 | 5695262 | 2.99% | 6062 |
| chr5 | 6987581 | 3.85% | 7155 |
| chr6 | 6881135 | 4.03% | 7123 |
| chr7 | 6049630 | 3.80% | 6410 |
| chr8 | 5780329 | 3.98% | 6146 |
| chr9 | 5307223 | 3.83% | 5492 |
| chr10 | 5362631 | 4.01% | 5569 |
| chr11 | 6859118 | 5.08% | 6782 |
| chr12 | 5316048 | 3.99% | 5585 |
| chr13 | 3273723 | 2.86% | 3467 |
| chr14 | 4102557 | 3.83% | 4216 |
| chr15 | 3662749 | 3.59% | 3773 |
| chr16 | 3160292 | 3.50% | 3281 |
| chr17 | 4859021 | 5.84% | 4813 |
| chr18 | 2774036 | 3.45% | 2913 |
| chr19 | 2753733 | 4.70% | 3055 |
| chr20 | 2760310 | 4.28% | 2882 |
| chr21 | 1023817 | 2.19% | 1138 |
| chr22 | 2054196 | 4.04% | 2069 |
| chrX | 1446037 | 0.93% | 2110 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 119954 | 205 | 14053 | 959.72 | 766.5 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF631WEB.bed.gz | 2.66 MB | 633684e70537be54d5a599bf82f88b44 |
| ENCFF631WEB.tabix.bed.gz | 1.22 MB | 9110aceb325be71c78909fef941ddf05 |
| ENCFF631WEB.tabix.bed.gz.tbi | 377.85 KB | 83002645199aaefcc59d401fd90f99e5 |
| genomic_resource.yaml | 2.07 KB | a3c25ff701b1557416787d63e0505524 |
| statistics/ |