Resource

Id Histone_ChIP-seq/ENCSR512BHQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR512BHQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR512BHQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-15T20:26:43.122385+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR512BHQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR512BHQ float

Histone_ChIP-seq_ENCSR512BHQ
Histone_ChIP-seq ENCSR512BHQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR512BHQ [1.76, 27.2]
n
111,928,080
mean
5.61
sd
1.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1119280803.48% 201617
chr1 5394582 2.17% 9278
chr2 8546315 3.53% 16254
chr3 5274289 2.66% 10670
chr4 7043711 3.70% 13986
chr5 7460398 4.11% 14120
chr6 4894102 2.87% 9040
chr7 9202441 5.78% 15811
chr8 7247219 4.99% 12335
chr9 3247593 2.35% 6337
chr10 6491319 4.85% 10626
chr11 4958003 3.67% 9262
chr12 5133912 3.85% 8892
chr13 4116704 3.60% 7813
chr14 3813568 3.56% 6654
chr15 3405887 3.34% 5962
chr16 4865495 5.39% 8970
chr17 2297369 2.76% 4020
chr18 3450204 4.29% 6355
chr19 5126047 8.74% 8201
chr20 3009191 4.67% 5180
chr21 2358395 5.05% 4302
chr22 2609345 5.13% 3287
chrX 1672827 1.07% 3576
chrY 309164 0.54% 686
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 201617 135 29672 555.15 426
global segment-length histogram

Files

Filename Size md5
ENCFF794TJE.bed.gz 3.81 MB cc6cb784af71d74cce73a972ded0f914
ENCFF794TJE.tabix.bed.gz 1.88 MB b42fcfc7f5f2f3e6ea8f844bf2665cad
ENCFF794TJE.tabix.bed.gz.tbi 342.55 KB 3c6d4e91a526804368f3744cafe4297e
genomic_resource.yaml 1.46 KB a79ecaeebbfd2b70232bc369a8001209
statistics/