Histone_ChIP-seq_ENCSR511OIE
Histone_ChIP-seq ENCSR511OIE [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR511OIE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR511OIE [biosamplesummary="Homo sapiens SU-DHL-6" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN754DRR|/analyses/ENCAN754DRR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN754DRR|/analyses/ENCAN754DRR/} has in progress subobject document {5670de02-44d8-43ef-8e77-ff821fce470e|/documents/5670de02-44d8-43ef-8e77-ff821fce470e/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF716LIL|/files/ENCFF716LIL/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF716LIL|/files/ENCFF716LIL/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.66. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR511OIE | float |
Histone_ChIP-seq_ENCSR511OIE |
Histone_ChIP-seq ENCSR511OIE [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K27me3"]
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[1.53, 4.07] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF436NPY.bed.gz | 86.07 KB | be72ab41ac4e72fcc5ba5a74bfe77fcd |
| ENCFF436NPY.bed.gz.dvc | 99.0 B | d58d84fbdf14fc70fa11a96c0c6bcb61 |
| ENCFF436NPY.tabix.bed.gz | 43.48 KB | e7b99d290db538def2f6a80a47fb48b7 |
| ENCFF436NPY.tabix.bed.gz.dvc | 105.0 B | 7633dc92bf9e35013a2c47a62110c2c6 |
| ENCFF436NPY.tabix.bed.gz.tbi | 42.22 KB | e5234d9c6831a2e1d1996c69a112f1f6 |
| ENCFF436NPY.tabix.bed.gz.tbi.dvc | 109.0 B | 7544944ef7c03e995f55fbb9b8e320af |
| genomic_resource.yaml | 2.99 KB | f28feacdf0c6d0236682b88b6fbbc64c |
| genomic_resource_original.yaml | 2.88 KB | 727690ed070397678bc975d4bad79dde |
| statistics/ |