Resource
| Id | Histone_ChIP-seq/ENCSR511OIE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR511OIE [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN754DRR|/analyses/ENCAN754DRR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN754DRR|/analyses/ENCAN754DRR/} has in progress subobject document {5670de02-44d8-43ef-8e77-ff821fce470e|/documents/5670de02-44d8-43ef-8e77-ff821fce470e/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF716LIL|/files/ENCFF716LIL/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF716LIL|/files/ENCFF716LIL/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.66. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR511OIE | float |
Histone_ChIP-seq_ENCSR511OIE |
Histone_ChIP-seq ENCSR511OIE [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K27me3"]
|
 |
[1.53, 4.07] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1351793 | 0.04% | 4111 |
| chr1 | 87383 | 0.04% | 265 |
| chr2 | 94062 | 0.04% | 297 |
| chr3 | 66546 | 0.03% | 201 |
| chr4 | 24006 | 0.01% | 69 |
| chr5 | 73793 | 0.04% | 223 |
| chr6 | 178424 | 0.10% | 511 |
| chr7 | 155002 | 0.10% | 468 |
| chr8 | 113321 | 0.08% | 358 |
| chr9 | 66409 | 0.05% | 203 |
| chr10 | 51657 | 0.04% | 167 |
| chr11 | 68758 | 0.05% | 214 |
| chr12 | 57605 | 0.04% | 176 |
| chr13 | 18315 | 0.02% | 60 |
| chr14 | 33391 | 0.03% | 97 |
| chr15 | 48157 | 0.05% | 146 |
| chr16 | 33190 | 0.04% | 97 |
| chr17 | 39533 | 0.05% | 118 |
| chr18 | 60767 | 0.08% | 189 |
| chr19 | 17486 | 0.03% | 55 |
| chr20 | 34860 | 0.05% | 109 |
| chr21 | 13954 | 0.03% | 44 |
| chr22 | 15174 | 0.03% | 44 |
| 3344 contigs with no values (342345395 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 4111 | 180 | 1128 | 328.82 | 307 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF436NPY.bed.gz | 86.07 KB | be72ab41ac4e72fcc5ba5a74bfe77fcd |
| ENCFF436NPY.tabix.bed.gz | 43.48 KB | e7b99d290db538def2f6a80a47fb48b7 |
| ENCFF436NPY.tabix.bed.gz.tbi | 42.22 KB | e5234d9c6831a2e1d1996c69a112f1f6 |
| genomic_resource.yaml | 2.99 KB | f28feacdf0c6d0236682b88b6fbbc64c |
| statistics/ |