Histone_ChIP-seq_ENCSR510NXV
Histone_ChIP-seq ENCSR510NXV [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR510NXV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR510NXV [biosamplesummary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (53 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN297RYO|/analyses/ENCAN297RYO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF113CGU|/files/ENCFF113CGU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19133165 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF113CGU|/files/ENCFF113CGU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF113CGU|/files/ENCFF113CGU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.07. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR510NXV | float |
Histone_ChIP-seq_ENCSR510NXV |
Histone_ChIP-seq ENCSR510NXV [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)" and target="H3K4me3"]
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[1.24, 78.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF733UYO.bed.gz | 990.38 KB | 77f06c3919902793da7d29dbc5a4150c |
| ENCFF733UYO.bed.gz.dvc | 101.0 B | f00be2469fe40d85766b8d70fce508cc |
| ENCFF733UYO.tabix.bed.gz | 419.67 KB | 202625b8327962824b01389b22419d32 |
| ENCFF733UYO.tabix.bed.gz.dvc | 106.0 B | 783d38774713a9bd1f7e91e7d4fa5829 |
| ENCFF733UYO.tabix.bed.gz.tbi | 201.87 KB | c4df440b2d2486f9bc47999ebcab7d72 |
| ENCFF733UYO.tabix.bed.gz.tbi.dvc | 110.0 B | a748eb18f8193caff6c7c748596c584a |
| genomic_resource.yaml | 3.29 KB | f11a471cad90c784b5948be32d5f624f |
| genomic_resource_original.yaml | 3.13 KB | 668ae3579e52b1e0038e04d6b08f380b |
| statistics/ |