Histone_ChIP-seq_ENCSR509MHV
Histone_ChIP-seq ENCSR509MHV [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H4K91ac"]
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| Id: | Histone_ChIP-seq/ENCSR509MHV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR509MHV [biosamplesummary="Homo sapiens mesenchymal stem cell originated from H1" and target="H4K91ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN107SPT|/analyses/ENCAN107SPT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN107SPT|/analyses/ENCAN107SPT/} has in progress subobject document {94c9458f-11c2-4d04-b776-2b9fb859eded|/documents/94c9458f-11c2-4d04-b776-2b9fb859eded/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF377OEI|/files/ENCFF377OEI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF377OEI|/files/ENCFF377OEI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR509MHV | float |
Histone_ChIP-seq_ENCSR509MHV |
Histone_ChIP-seq ENCSR509MHV [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H4K91ac"]
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[1.79, 26.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF180NUC.bed.gz | 2.13 MB | 72b9508700a4fded7130c7f6db320285 |
| ENCFF180NUC.bed.gz.dvc | 101.0 B | e754aabc3e1bd3f42a96b9b9ba5fd04f |
| ENCFF180NUC.tabix.bed.gz | 1.03 MB | 4814f5e396b011eb433b4aabd85c671d |
| ENCFF180NUC.tabix.bed.gz.dvc | 107.0 B | 53e0f0067a360fd956769a30f6f6a3e4 |
| ENCFF180NUC.tabix.bed.gz.tbi | 325.27 KB | 4c504566d02c155521932312e3a917f2 |
| ENCFF180NUC.tabix.bed.gz.tbi.dvc | 110.0 B | a90389c52a856a8cafcf348029f6fef3 |
| genomic_resource.yaml | 2.98 KB | 520d88e9eeb993b89356fc4cce1c7d52 |
| genomic_resource_original.yaml | 2.84 KB | c76739c5196616eaf0c2f36672f5911a |
| statistics/ |