Histone_ChIP-seq_ENCSR508UPW
Histone_ChIP-seq ENCSR508UPW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue female adult (53 years)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR508UPW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR508UPW [biosamplesummary="Homo sapiens esophagus squamous epithelium tissue female adult (53 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN945CIO|/analyses/ENCAN945CIO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN945CIO|/analyses/ENCAN945CIO/} has in progress subobject document {69649674-9409-432b-829f-8a1a555f0dd8|/documents/69649674-9409-432b-829f-8a1a555f0dd8/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF117IKR|/files/ENCFF117IKR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF117IKR|/files/ENCFF117IKR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.94. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF088NXG|/files/ENCFF088NXG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF088NXG|/files/ENCFF088NXG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.79. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR508UPW | float |
Histone_ChIP-seq_ENCSR508UPW |
Histone_ChIP-seq ENCSR508UPW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue female adult (53 years)" and target="H3K4me3"]
|
|
[1.53, 93] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF313UUQ.bed.gz | 1.07 MB | b92ba909e216aaaf6e7b6183c4276bd4 |
| ENCFF313UUQ.bed.gz.dvc | 101.0 B | 5b0d4dab37460bcb8cefacc8090a6364 |
| ENCFF313UUQ.tabix.bed.gz | 469.86 KB | afb53469c8c458df22a6a21261a9d432 |
| ENCFF313UUQ.tabix.bed.gz.dvc | 106.0 B | 6480ae28d26da0cba5cab3c77c4b3cb3 |
| ENCFF313UUQ.tabix.bed.gz.tbi | 217.77 KB | d7e1a121e35ee5918a2d0a71720acfc3 |
| ENCFF313UUQ.tabix.bed.gz.tbi.dvc | 110.0 B | d727cf674de7863d6471c28a9aa489d7 |
| genomic_resource.yaml | 4.32 KB | d798b14fc30c1a9ec8213691491379aa |
| genomic_resource_original.yaml | 4.16 KB | 78c1391f3d9fecb7b8b582846802847a |
| statistics/ |