Histone_ChIP-seq_ENCSR507UDH
Histone_ChIP-seq ENCSR507UDH [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR507UDH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR507UDH [biosamplesummary="Homo sapiens hepatocyte originated from H9" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN960CUU|/analyses/ENCAN960CUU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF891WDF|/files/ENCFF891WDF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF891WDF|/files/ENCFF891WDF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR507UDH | float |
Histone_ChIP-seq_ENCSR507UDH |
Histone_ChIP-seq ENCSR507UDH [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K27ac"]
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[1.44, 35.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF244MRN.bed.gz | 3.27 MB | ddaa0fe91fcd4ea14365a880b54e945a |
| ENCFF244MRN.bed.gz.dvc | 101.0 B | 62d18fdd4ef08fe7bb1616cda045d45f |
| ENCFF244MRN.tabix.bed.gz | 1.36 MB | 9e87d0c37b164c6ad031f691bcca8206 |
| ENCFF244MRN.tabix.bed.gz.dvc | 107.0 B | 08853a7c7f1bcfa42b9f8ab7b452d9be |
| ENCFF244MRN.tabix.bed.gz.tbi | 352.26 KB | 6b8966e3d997fe99cdb41e794ccc6387 |
| ENCFF244MRN.tabix.bed.gz.tbi.dvc | 110.0 B | 4ce7fc268fc6f13dcf0cbe0901b909b5 |
| genomic_resource.yaml | 2.74 KB | 4201a9c4a61d668b276e4a7bfbda42d6 |
| genomic_resource_original.yaml | 2.61 KB | 24814b120b0a0b09b04f83af33732ffb |
| statistics/ |