Resource
| Id | Histone_ChIP-seq/ENCSR505THJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR505THJ [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN863WRY|/analyses/ENCAN863WRY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF577SLD|/files/ENCFF577SLD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22067734 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR505THJ | float |
Histone_ChIP-seq_ENCSR505THJ |
Histone_ChIP-seq ENCSR505THJ [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K36me3"]
|
 |
[1.56, 25.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 185288019 | 5.76% | 154507 |
| chr1 | 18505596 | 7.43% | 15254 |
| chr2 | 14585850 | 6.02% | 13184 |
| chr3 | 11339573 | 5.72% | 10281 |
| chr4 | 7365036 | 3.87% | 7141 |
| chr5 | 9288233 | 5.12% | 8144 |
| chr6 | 8318946 | 4.87% | 7655 |
| chr7 | 8326872 | 5.23% | 7386 |
| chr8 | 6570586 | 4.53% | 6092 |
| chr9 | 7671916 | 5.54% | 6374 |
| chr10 | 8096408 | 6.05% | 6947 |
| chr11 | 9461317 | 7.00% | 7411 |
| chr12 | 10428384 | 7.82% | 8192 |
| chr13 | 4275340 | 3.74% | 4193 |
| chr14 | 6289840 | 5.88% | 5363 |
| chr15 | 7667425 | 7.52% | 6451 |
| chr16 | 7847534 | 8.69% | 5484 |
| chr17 | 10794017 | 12.96% | 7836 |
| chr18 | 3362464 | 4.18% | 3183 |
| chr19 | 10474818 | 17.87% | 6088 |
| chr20 | 4984319 | 7.73% | 3837 |
| chr21 | 2024424 | 4.33% | 1588 |
| chr22 | 4500513 | 8.86% | 3071 |
| chrX | 2960328 | 1.90% | 3170 |
| chrY | 148280 | 0.26% | 182 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 154507 | 175 | 41841 | 1199.22 | 706 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF377DZS.bed.gz | 3.33 MB | 8694824b81d1ac07f00ebfc836c668a6 |
| ENCFF377DZS.tabix.bed.gz | 1.54 MB | 047e9fc7d8c35e19027ca4b11d2f50dd |
| ENCFF377DZS.tabix.bed.gz.tbi | 175.1 KB | f211cd24e4927b7deeb7c54c96b3d13c |
| genomic_resource.yaml | 1.95 KB | 0fd6b2cbffde0f5f5fcdc29bc90779b5 |
| statistics/ |