Histone_ChIP-seq_ENCSR505OPZ
Histone_ChIP-seq ENCSR505OPZ [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR505OPZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR505OPZ [biosamplesummary="Homo sapiens iPS DF 19.11" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN146WKQ|/analyses/ENCAN146WKQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF456DFB|/files/ENCFF456DFB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF456DFB|/files/ENCFF456DFB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF111NTK|/files/ENCFF111NTK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF111NTK|/files/ENCFF111NTK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR505OPZ | float |
Histone_ChIP-seq_ENCSR505OPZ |
Histone_ChIP-seq ENCSR505OPZ [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K27ac"]
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[2.01, 12.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF749RHX.bed.gz | 347.61 KB | 6de93d1da70f9d169d9897e9eb7ae520 |
| ENCFF749RHX.bed.gz.dvc | 100.0 B | d7d9a00ddb15770095896e6e34d9251e |
| ENCFF749RHX.tabix.bed.gz | 183.08 KB | 09166c39adc4011df423952a6ca3889d |
| ENCFF749RHX.tabix.bed.gz.dvc | 106.0 B | 6836e704b163307a498387d807dfaaf9 |
| ENCFF749RHX.tabix.bed.gz.tbi | 93.34 KB | 4c3918d83f8e26bd0c127fa83344598b |
| ENCFF749RHX.tabix.bed.gz.tbi.dvc | 109.0 B | f8aaa229079b87f6851516e717d9f500 |
| genomic_resource.yaml | 3.98 KB | 3f2e1db5d251874c05475ed010dd67ef |
| genomic_resource_original.yaml | 3.87 KB | 3664e3dffc2c6647199f575e12755924 |
| statistics/ |