Resource

Id Histone_ChIP-seq/ENCSR505JQCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR505JQC [biosample_summary="Homo sapiens iPS-18a" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR505JQC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007105/
  • biosample_summary: Homo sapiens iPS-18a
  • date_created: 2015-09-15T19:51:32.586276+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR505JQC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR505JQC float

Histone_ChIP-seq_ENCSR505JQC
Histone_ChIP-seq ENCSR505JQC [biosample_summary="Homo sapiens iPS-18a" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR505JQC [1.68, 85.2]
n
54,789,991
mean
24.3
sd
15.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 547899911.70% 39120
chr1 5292101 2.13% 3664
chr1_KI270713v1_random 2644 6.49% 5
chr2 3851471 1.59% 2762
chr3 3187101 1.61% 2243
chr4 2415104 1.27% 1726
chr5 2790946 1.54% 1941
chr6 3469803 2.03% 2225
chr7 2681106 1.68% 2007
chr8 2144394 1.48% 1540
chr9 2194615 1.59% 1646
chr10 2387068 1.78% 1728
chr11 2889878 2.14% 2019
chr12 2862878 2.15% 1968
chr13 1264249 1.11% 892
chr14 1778437 1.66% 1208
chr15 1787314 1.75% 1293
chr16 1919505 2.12% 1442
chr17 2813090 3.38% 2019
chr17_GL000205v2_random 2748 1.48% 3
chr17_KI270729v1_random 1748 0.62% 3
chr18 1063871 1.32% 795
chr19 2934136 5.01% 2186
chr20 1428533 2.22% 1079
chr21 518872 1.11% 394
chr22 1006481 1.98% 797
chr22_KI270738v1_random 321 0.32% 1
chrUn_GL000195v1 783 0.43% 1
chrUn_GL000216v2 1745 0.99% 3
chrUn_KI270337v1 496 44.25% 1
chrUn_KI270438v1 415 0.37% 1
chrUn_KI270442v1 829 0.21% 2
chrUn_KI270466v1 343 27.82% 1
chrUn_KI270467v1 1000 25.51% 1
chrUn_KI270519v1 306 0.22% 1
chrUn_KI270538v1 410 0.45% 1
chrUn_KI270746v1 410 0.62% 1
chrX 2094840 1.34% 1521
3329 contigs with no values (184531685 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39120 235 16979 1400.56 1054
global segment-length histogram

Files

Filename Size md5
ENCFF535AUL.bed.gz 1.02 MB a8a649d624acf7c060cab02ba9ad622f
ENCFF535AUL.tabix.bed.gz 445.64 KB a8a99ca8300fc1da6d6b9eb759a1f77e
ENCFF535AUL.tabix.bed.gz.tbi 209.7 KB 8c748f9560b32d8826758107debd7034
genomic_resource.yaml 1.37 KB a527201c433769ea388ae1cca44dbe91
statistics/