Histone_ChIP-seq_ENCSR501JET
Histone_ChIP-seq ENCSR501JET [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR501JET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR501JET [biosamplesummary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN524AKT|/analyses/ENCAN524AKT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN524AKT|/analyses/ENCAN524AKT/} has in progress subobject document {ea485615-c8dc-47fc-82c9-78d54416c641|/documents/ea485615-c8dc-47fc-82c9-78d54416c641/} audit_not_compliant: Processed alignments file {ENCFF126MVV|/files/ENCFF126MVV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 9294981 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF655EKU|/files/ENCFF655EKU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13480637 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF655EKU|/files/ENCFF655EKU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF655EKU|/files/ENCFF655EKU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR501JET | float |
Histone_ChIP-seq_ENCSR501JET |
Histone_ChIP-seq ENCSR501JET [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K4me3"]
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[1.94, 100] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF570CII.bed.gz | 891.59 KB | 3885900330ac6198669152d8c891c318 |
| ENCFF570CII.bed.gz.dvc | 100.0 B | eb39290677c990d8d43dd2d853e49079 |
| ENCFF570CII.tabix.bed.gz | 388.05 KB | 34c9b005458b1107920a5e1d1ffa8d9d |
| ENCFF570CII.tabix.bed.gz.dvc | 106.0 B | bac968bdd3f823b6a75f40c4279e7520 |
| ENCFF570CII.tabix.bed.gz.tbi | 181.47 KB | c1f250f69d7f69636ae33e9fbc5ab0d3 |
| ENCFF570CII.tabix.bed.gz.tbi.dvc | 110.0 B | 5da01b828dc8b9d9d427c2a34a013a55 |
| genomic_resource.yaml | 3.95 KB | 2bdbe340ab99a72171e5be70d62b3438 |
| genomic_resource_original.yaml | 3.82 KB | f454a7bbce8a0c8badb975529dd85121 |
| statistics/ |