Resource

Id Histone_ChIP-seq/ENCSR501FTLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR501FTL [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR501FTL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0014455/
  • biosample_summary: Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)
  • date_created: 2015-09-15T19:52:45.423299+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR501FTL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years) nuclear fraction
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR501FTL float

Histone_ChIP-seq_ENCSR501FTL
Histone_ChIP-seq ENCSR501FTL [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR501FTL [1.87, 66.1]
n
44,876,421
mean
16.1
sd
10.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 448764211.39% 49068
chr1 3954067 1.59% 4111
chr1_KI270709v1_random 269 0.40% 1
chr2 2922744 1.21% 3152
chr2_KI270716v1_random 203 0.13% 1
chr3 2449889 1.24% 2541
chr4 1893635 1.00% 2044
chr4_GL000008v2_random 4122 1.97% 4
chr5 2320290 1.28% 2472
chr6 2401389 1.41% 2453
chr7 2314489 1.45% 2765
chr8 1761417 1.21% 2027
chr9 1793705 1.30% 1963
chr10 2049216 1.53% 2342
chr11 2330107 1.72% 2528
chr12 2427730 1.82% 2539
chr13 916548 0.80% 1038
chr14 1347841 1.26% 1414
chr14_GL000225v1_random 1123 0.53% 3
chr14_KI270722v1_random 314 0.16% 1
chr15 1391863 1.36% 1446
chr16 1575465 1.74% 1709
chr17 2245448 2.70% 2356
chr17_GL000205v2_random 2672 1.44% 2
chr17_KI270729v1_random 13891 4.95% 31
chr17_KI270730v1_random 7482 6.65% 11
chr18 769313 0.96% 889
chr19 4316249 7.36% 4872
chr20 1010968 1.57% 1128
chr21 460665 0.99% 533
chr22 837647 1.65% 927
chr22_KI270735v1_random 623 1.46% 2
chr22_KI270736v1_random 65838 36.19% 91
chr22_KI270738v1_random 270 0.27% 1
chrUn_GL000216v2 1256 0.71% 4
chrUn_GL000219v1 2654 1.48% 4
chrUn_GL000220v1 288 0.18% 1
chrUn_GL000224v1 3689 2.05% 7
chrUn_KI270435v1 651 0.70% 2
chrUn_KI270438v1 7067 6.28% 15
chrUn_KI270442v1 23898 6.10% 37
chrUn_KI270512v1 701 3.09% 1
chrUn_KI270519v1 1276 0.92% 2
chrUn_KI270538v1 315 0.34% 1
chrUn_KI270589v1 2834 6.37% 3
chrUn_KI270590v1 236 5.04% 1
chrUn_KI270591v1 566 9.77% 1
chrUn_KI270751v1 660 0.44% 1
chrUn_KI270756v1 761 0.96% 2
chrUn_KI270757v1 2277 3.20% 3
chrX 1235249 0.79% 1577
chrY 4551 0.01% 9
3315 contigs with no values (125434895 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49068 175 23978 914.58 613
global segment-length histogram

Files

Filename Size md5
ENCFF290CQD.bed.gz 1.13 MB 98b10296fa728048950873a19c6539b6
ENCFF290CQD.tabix.bed.gz 524.86 KB 2427db55338a6270926c21a3735f4d58
ENCFF290CQD.tabix.bed.gz.tbi 226.46 KB bca16334ad98b61a812a3c1c5e0c869a
genomic_resource.yaml 1.67 KB cb42395960f908fbcf53f84640aa4e63
statistics/