Resource

Id Histone_ChIP-seq/ENCSR500QVKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR500QVK [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR500QVK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue female adult (51 years)
  • date_created: 2018-11-07T17:35:48.308187+00:00
  • date_released: 2018-12-14
  • doi: 10.17989/ENCSR500QVK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR500QVK float

Histone_ChIP-seq_ENCSR500QVK
Histone_ChIP-seq ENCSR500QVK [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR500QVK [1.4, 9.44]
n
66,239,653
mean
3.67
sd
0.933

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 662396532.06% 117199
chr1 7092626 2.85% 12187
chr2 4905793 2.03% 9204
chr3 3969574 2.00% 7487
chr4 2337271 1.23% 4705
chr5 3101310 1.71% 5796
chr6 3297548 1.93% 6328
chr7 2924300 1.84% 5462
chr8 2434547 1.68% 4569
chr9 3174236 2.29% 5391
chr10 3498228 2.61% 6266
chr11 3859366 2.86% 6387
chr12 3294550 2.47% 5842
chr13 1257819 1.10% 2475
chr14 2408391 2.25% 4154
chr15 2380518 2.33% 4281
chr16 2780695 3.08% 4542
chr17 4202227 5.05% 6490
chr18 1042207 1.30% 2100
chr19 3275107 5.59% 4867
chr20 2021147 3.14% 3364
chr21 755170 1.62% 1425
chr22 1842353 3.63% 2921
chrX 384507 0.25% 955
chrY 163 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117199 110 10347 565.19 422
global segment-length histogram

Files

Filename Size md5
ENCFF543AEK.bed.gz 2.43 MB 3996437259c4606ef3398ae118b04a87
ENCFF543AEK.tabix.bed.gz 1.16 MB 41e319917dd5dbe53ea6ba01f746cab6
ENCFF543AEK.tabix.bed.gz.tbi 296.94 KB 05d302708c36bc59777114fd7313f98d
genomic_resource.yaml 1.52 KB d53fdf8afcb5bfa2ccfa0f0833321efb
statistics/